cbb313a2ce23614d8316a05dbb9e6ff7 *DESCRIPTION
1442a9ddbc0c0cd968a153971ccaca93 *NAMESPACE
3180e9d5214efd81ccfdff052d7d2eb8 *R/dart2genlight.r
1820e182439e14797cc8bc00ac9250aa *R/datasets.r
7edb7a8d0cdd1cdd075b9dcdccebc4ef *R/gi2gl.R
6309b0f1b06f6db21a03fe2d9e4bc905 *R/gl.Ho.r
e32c34c9b0731fa49d159527679d7dd5 *R/gl.Hs.r
1fc5b977f2c5b27a2774a38feafacb5e *R/gl.alf.r
25a59478600c6475e916333400a85900 *R/gl.amova.r
338025878adbd33e93980119ac831565 *R/gl.assign.r
b3af06a48c599f94f6c8a15665cb8d6f *R/gl.basic.stats.r
d875abc96e6b26358c8af19c4cc38763 *R/gl.collapse.pval.r
7ebe69004a1a0f17b4ea869422229a66 *R/gl.collapse.r
ea3e238504bba7b4f9b574da832653ec *R/gl.collapse.recursive.r
9db05ac933499101a6e12556ff4b7aa2 *R/gl.costdistances.r
3a8b2925a036d6c173fae81703506dc2 *R/gl.define.pop.r
5087873604e875e6d794ed7c48b4f14a *R/gl.dist.heatmap.r
ba12de8c87fdbc632a5a438d0400e611 *R/gl.dist.pop.r
f27014f1ddf23274b566df02ddf5a589 *R/gl.diversity.r
24246f1b82a733abf6b98fb011a800e6 *R/gl.drop.ind.r
c4a5465e9d43b3e411ec2f85eb8326bd *R/gl.drop.loc.r
0f63c4a221c8b9c496c8b245ebc6921b *R/gl.drop.pop.r
fbfbb04cd00579b6e667cbf5170b668b *R/gl.edit.recode.ind.r
58810b5f6b02259c770b29f7c8f32751 *R/gl.edit.recode.pop.r
bba7e07f5b322d4f2a3e6084547f6650 *R/gl.filter.callrate.r
3b8acd88eab6d30a9882c3c6b2438c44 *R/gl.filter.cloneid.r
289c44accdafd87aabb36cd71f7f62c4 *R/gl.filter.hamming.r
73714ee7405a392adf56665e1276e3c0 *R/gl.filter.hwe.r
35363fa08f7e7efb1458dbc79995f9df *R/gl.filter.maf.r
b0cbb8a92d419e4d3a8b737659573161 *R/gl.filter.monomorphs.r
d2f49e88e8d7554e806c7d6ac6ead0d0 *R/gl.filter.repavg.r
54a452201d1061c5af6dc5e5e29e3161 *R/gl.filter.secondaries.r
02aed9f393b12ba70e3670a66f6b86c3 *R/gl.fixed.diff.r
9ee69aadc9f6a001b2199667a5739ba6 *R/gl.fst.pop.r
8f96e008c5d8dd75c4fb38577e05b082 *R/gl.gene.freq.r
91c8cc761f552006ed75a626dec69e7a *R/gl.genleastcost.r
211ab9b1f50708025110e58748afdc58 *R/gl.grm.network.r
6a0433e7878c9723f34c3378183a5e14 *R/gl.grm.r
241edb43471038813b0476eab7083349 *R/gl.hwe.pop.r
01cc3d5210b1f1a348264b19a3c8987a *R/gl.ibd.r
46001d167ecd8020d17152edaf80d89d *R/gl.keep.ind.r
da14de434ba9e6af86a5e7194aadb45e *R/gl.keep.pop.r
c5915ee17822c054b93615bb32f2f8bc *R/gl.make.recode.ind.r
e79cba06e08a6452b6fdefd108b158cb *R/gl.make.recode.pop.r
2d60f3f45b8e25dfca44d6295571d0ca *R/gl.map.interactive.r
361dfd0914e5df048f6ce2ab86e4b56a *R/gl.merge.pop.r
7efd7ddf720ec584841570e7c3c10e1b *R/gl.nhybrids.r
08145791f631cb3325af49389513cfa3 *R/gl.outflank.r
19390891ab469b96a600aa495df61985 *R/gl.pcoa.plot.3d.r
73184c892c6e825cf8077c8593e735e6 *R/gl.pcoa.plot.r
47011cc35bf3941c204c319ed651ada9 *R/gl.pcoa.pop.r
ad210be746ef7b11c7250afbe0a3b2fd *R/gl.pcoa.r
08a88be04566985c297a92bb135ebfd4 *R/gl.pcoa.scree.r
bea297790560dc712065f889d4f65993 *R/gl.percent.freq.r
b923997fb2b95328bda19b113259d724 *R/gl.plot.r
29b1696cd8f40312d4b45fb5c6dcb3b4 *R/gl.read.dart.2row.r
dbbb5a22d0224e9c99b2fd711675dfb0 *R/gl.read.dart.r
2bdf3b6e343c8826d914beacea95390a *R/gl.read.silicodart.r
3774c8d926e69b7ff1991cfd308e9e70 *R/gl.recalc.metrics.r
4271619f2ae53a92030e9516b17fb62b *R/gl.recode.ind.r
6da08017275417dd12db7017724d63f0 *R/gl.recode.pop.r
b6260d4ded82bfc221a8c4ed204c3b4d *R/gl.report.bases.r
e923f85221e8013332d4b486c321797d *R/gl.report.callrate.r
d87f6e7419d32747bcdbc906cf768515 *R/gl.report.hamming.r
50dc5da44f31d96091efb6a11910e1c7 *R/gl.report.heterozygosity.r
240ce3bc94e2d796566ce8ed0c6a2377 *R/gl.report.hwe.r
d4b8df860cab73279d60c87de55bfc4d *R/gl.report.ld.r
6928c6a3d94dd559052b5fced84a822a *R/gl.report.maf.r
18e19eb1af70104f8d44c70ab3e73603 *R/gl.report.monomorphs.r
7f7f8daf802725dc3930e927831cde08 *R/gl.report.pa.pop.r
dd1ba484dde71cbd482f5e6255921b2d *R/gl.report.pa.r
50db63c60587ffd6cee246a53b383c86 *R/gl.report.repavg.r
8c993ae84336a488f4216ac0fc49277a *R/gl.report.secondaries.r
fc5cca95d14675192ecaa4b9a73305f2 *R/gl.sexlinkage.r
8c4e5b87edd457c7099b973f9a00f5fb *R/gl.sim.ind.r
c33a42440a9ba67d62ad7c52ef0f0c82 *R/gl.sim.offspring.r
0976d42e391c17c98676a37f991411cf *R/gl.subsample.loci.r
50d4c0824984471ab7435cc372bea689 *R/gl.tree.nj.r
e3bb28923b73191f929258898e9de1d0 *R/gl.utils.fdsim.r
a39064f3a7d6db25d3744de887987c1e *R/gl.write.csv.r
92f59a2f987881c4b0af8ad2bf019498 *R/gl2demerelate.r
b84a150cff70858f712568f48694fbf9 *R/gl2fasta.r
e833c8e097ced8f9415026339b5848eb *R/gl2faststructure.r
16cb509c6f0b1ca85677693cf26425d1 *R/gl2gds.r
1d214b24cba44b54236d61e0563f76a7 *R/gl2gi.r
4bf7b3d0150754204d73bf17bae87269 *R/gl2phylip.r
c4ecb8db0adf591e1b76fb02bd10a2dd *R/gl2plink.r
6c4c11fb2c8d47c2ff9e03ef8848afa1 *R/gl2sa.r
f8f7d21a93acbdac2a983c09634329eb *R/gl2shp.R
eb4281b093afe66974392c004aca54db *R/gl2snapp.r
fa4ccac86bfe19deba24a8211975cb5b *R/gl2structure.r
4647f6d6368f89e09ecd507dd1f65537 *R/gl2svdquartets.r
25ca77cf1cf5d069d792e3e9a450f592 *R/gl2treemix.r
ba3aee0029c0d342d4e5474037cd46bc *R/imports.r
c182dc5487acbeb8aeaf84e98326fe39 *R/is.fixed.r
b746156641aa01d14b0f50dc0f0b3e7b *R/prob.hwe.r
52776e2c2a9ed921d39d399cb6158a76 *R/read.dart.R
82ad87967baccdfba921e8e99897111a *R/util.outflank.diploids.r
2c8e34067d4f1834f7af270f0e85e08b *R/util.outflank.fst.r
90dae89003a932ae1ecdd962aa1fa543 *R/util.outflank.likelihood.r
989160d695cd5b3681dbed8ffb71652c *R/util.outflank.plotter.r
a4434b60754f909d4f06c701294f5a23 *R/util.outflank.r
4311ea455388a573d63d96b76ef6bb65 *R/utils.hamming.r
139e4dc6fef350bb705b8a38034e4142 *R/utils.hwe.r
de4fa903dbbd09f26e58eae1d852da3d *R/utils.recalc.avgpic.r
d71dd218c905e58d4a2ed3ed48fb7f36 *R/utils.recalc.callrate.r
74d848b85ff51d59ee8191f56dc0ca72 *R/utils.recalc.freqhets.r
f80bcfcf1eef08509f876a7caf80e855 *R/utils.recalc.freqhomref.r
dab7cee9e086f008d596f9e9518f6ba5 *R/utils.recalc.freqhomsnp.r
b0ff4c631eb1f7a442ecb3bdc062e3b5 *R/utils.recalc.maf.r
d268b061edeb5c2b37f17e8aa19e206a *build/vignette.rds
cd6cd217307cccfe42267bea2e87bb70 *data/bandicoot.rda
269b9ad19c51b1fd25d6124292455f21 *data/possums.gl.rda
e4a8e161eaa78a7c3e63637eb6a491e3 *data/testset.gl.rda
237e93c9c1b716378f467ef07327c322 *inst/doc/IntroTutorial_dartR.R
5eef04afdea093c63022996f577afbb4 *inst/doc/IntroTutorial_dartR.Rmd
be96d9cdd119853ac1ffa3a0084da794 *inst/doc/IntroTutorial_dartR.pdf
0e81e930b87b635288085218a3e6d565 *inst/extdata/landscape.sim.rdata
a398e58f8cde3aadff0237edcf6fd3e1 *inst/extdata/platy.csv
9acb8448800def76024393c9790ff88d *inst/extdata/testset_SNPs_2Row.csv
c8c97f53ba2b1a569b1a1ed30e30c4a2 *inst/extdata/testset_metadata.csv
a7794933b51595f2eac07013052678d5 *inst/extdata/testset_pop_recode.csv
6340bbdc3f1fa3dad3c433075a81e401 *man/bandicoot.gl.Rd
2edb406a3a6518c0d17ca8b28f0ebf4f *man/dart2genlight.Rd
2b381d176e25c471b346ae05c6076db3 *man/gi2gl.Rd
25659df88d6d6c673f8144f2d03444ca *man/gl.Ho.Rd
0c010903c35ae6fd38cd0071c33c9eaa *man/gl.Hs.Rd
033dbe3b4e6dfb5e22f06b9e270d7409 *man/gl.alf.Rd
406d6e3d5d264e6ace038fa0971c8f52 *man/gl.amova.Rd
e3547fdf580c4663fff0513c588c28be *man/gl.assign.Rd
bcc24d0a9d079f98b679211b3b113704 *man/gl.basic.stats.Rd
8311e1090744a9720a5313167ceb0e0c *man/gl.collapse.Rd
d5122485087ab7e5a8d0e49e647abc8e *man/gl.collapse.pval.Rd
3def1cdd3cdd2514c63a2cbb24db5c8e *man/gl.collapse.recursive.Rd
b563ed48eebb8a94507b4531b54d840a *man/gl.costdistances.Rd
7c4e9b35b2fd923032fe6f8bdd1e4848 *man/gl.define.pop.Rd
30fcf0840b1c15c80bfe178547b7b369 *man/gl.dist.heatmap.Rd
14c194d0b74b3338ae719e19725876c7 *man/gl.dist.pop.Rd
a337d991b5cd6ed96b05417cc390b747 *man/gl.diversity.Rd
080db2e99d73d3d62f2f9f0c4c77b7d4 *man/gl.drop.ind.Rd
246b3fb025da6789a327221faa5f161c *man/gl.drop.loc.Rd
65ab051627640fd36984c6790872d94d *man/gl.drop.pop.Rd
b8bd6a8e437d32e60e05fb633dd32711 *man/gl.edit.recode.ind.Rd
d4dd033335b588af71afdfbf0b6bb43f *man/gl.edit.recode.pop.Rd
21d11ece1273669f33ede006df52174f *man/gl.filter.callrate.Rd
02ee9b3fa78947960f96bc0cc6ff9848 *man/gl.filter.cloneid.Rd
bc525d0abbd1be6dbdd86ba616b72733 *man/gl.filter.hamming.Rd
374af38cb2d5c022fac6e9cde4a2b849 *man/gl.filter.hwe.Rd
d95439392a5353fa0f4ad093470b0114 *man/gl.filter.maf.Rd
e36de360afed21e19be657ce15259cb9 *man/gl.filter.monomorphs.Rd
0adde0d0e78857f0996e4d09e7f9406a *man/gl.filter.repavg.Rd
e10c5ee7fb2f03f764727b117c5cf8a7 *man/gl.filter.secondaries.Rd
7502cbf2a0508967d5135666623c8949 *man/gl.fixed.diff.Rd
8fbbe01e0a5c0a9173cc1ba7287c8ac9 *man/gl.fst.pop.Rd
a83946ae83ce75025193199ea49e486b *man/gl.gene.freq.Rd
e353c7062e97376bf319d5b6ff81fb30 *man/gl.genleastcost.Rd
ee975dc313a59e74ce487f6dbe3195c8 *man/gl.grm.Rd
9bd2af5d02e48d71b214ebabc0dc466f *man/gl.grm.network.Rd
bd3bb506a29c0017034f9390f886898d *man/gl.hwe.pop.Rd
252302df1a61e6ba959eb93a772fcdbd *man/gl.ibd.Rd
e40459343300196be48305569dab02ff *man/gl.keep.ind.Rd
5f49dda3814e726fbda8622062fb38cd *man/gl.keep.pop.Rd
37e6f2d9beab0f5ddff7354b957e7555 *man/gl.make.recode.ind.Rd
6f27e6c1e5360941d5e4bae1ecd248ea *man/gl.make.recode.pop.Rd
66cd8f0de5351328bf990ac641051782 *man/gl.map.interactive.Rd
0ecdc71d9798db5481f7a52e4b1348b5 *man/gl.merge.pop.Rd
790dd9c4cd1a64380d86deea88bb25c5 *man/gl.nhybrids.Rd
7409106f81d7fa7c3429c6f1c3c0fc6e *man/gl.outflank.Rd
0b011a4bbf964bb5b8e67e9bb9b70554 *man/gl.pcoa.Rd
25f554aba49e123a6b40901a26af0896 *man/gl.pcoa.plot.3d.Rd
00b2e9a7061dd216b476ca62ecdd07b5 *man/gl.pcoa.plot.Rd
f5ba2554037088c414a8890bd735fcf7 *man/gl.pcoa.pop.Rd
ed062b7023bb5d86cc0ded961a855f0b *man/gl.pcoa.scree.Rd
cc25487c5ea47e07df597960e9533df6 *man/gl.percent.freq.Rd
c4fad1e08d64544b7c00a9efb1c58d45 *man/gl.plot.Rd
f0c1d7b02797fdd6dca19bd5f0ef3493 *man/gl.read.dart.2row.Rd
f4004b2b434920151bf08ea6a1e5e95b *man/gl.read.dart.Rd
0c371a2cecfd3d4d1ec285b7c8e68c63 *man/gl.read.silicodart.Rd
3102dd2fe62bae220f90c0f60ff0a7a8 *man/gl.recalc.metrics.Rd
c9d480906c27961478079e8542a1d088 *man/gl.recode.ind.Rd
7473812f89ec1ed298025b934b31cac0 *man/gl.recode.pop.Rd
c1097094f8f9fe7469108ae448b26fa8 *man/gl.report.bases.Rd
8c4eee3ccbd5437737d876a0080a2b45 *man/gl.report.callrate.Rd
f83bec016c60c700df8df62b1ec1083f *man/gl.report.hamming.Rd
c45f09a6808eaabd8035e7613e5b4249 *man/gl.report.heterozygosity.Rd
018c8c8f26da5387e8f95f206bd08bd1 *man/gl.report.hwe.Rd
1e77ed522a3c50728d838494e736776c *man/gl.report.ld.Rd
cbafa62977b51a2afc916d5e367cc25a *man/gl.report.maf.Rd
4cf261645d61c96612bd1f01b3782875 *man/gl.report.monomorphs.Rd
2403c9f94ff4151c2e8260b9dd011a0f *man/gl.report.pa.Rd
749d737d8a5958f3260a26e5f361b782 *man/gl.report.pa.pop.Rd
9e5d4a886d73e966db705ce9b2f098d9 *man/gl.report.repavg.Rd
b05ffbef9ee91d3393231deb58b3422e *man/gl.report.secondaries.Rd
6cd3ca3ed1009de2be8238b34ea28814 *man/gl.sexlinkage.Rd
aec0f21d844512f3cfc8ebca2d41201e *man/gl.sim.ind.Rd
4640340318bb1663b3b9853b63e5f03c *man/gl.sim.offspring.Rd
46270ae07803d4a6d39739b6417d1c58 *man/gl.subsample.loci.Rd
694c4807a8a9dcd1c3fdaff9587dbbcd *man/gl.tree.nj.Rd
98eae8f8bab1ae336d3a3234a4fc4aa3 *man/gl.utils.fdsim.Rd
6c59756bd6970436b54fa7a0f60f97a1 *man/gl.write.csv.Rd
93742c1e1e0045ad03954e32b0a50b71 *man/gl2demerelate.Rd
8048a444adf5ce196f5b46691b45a153 *man/gl2fasta.Rd
d6cdfb2327779570af42a1f02516cb14 *man/gl2faststructure.Rd
bab1c9b6c9512d17703ed67be7ef08a8 *man/gl2gds.Rd
09d44744acb1ee36a68e20816e39ae16 *man/gl2gi.Rd
9caec3a8b6771b723bf4591ab71739b8 *man/gl2phylip.Rd
0f636ffa071e13bec5a5e2d631f696d0 *man/gl2plink.Rd
7bbd337e46b6cea06924edaac1e0f8fd *man/gl2sa.Rd
1c40843844290342c0d36b7cffc487cb *man/gl2shp.Rd
59367a467975a8baec6e5225cd672ee8 *man/gl2snapp.Rd
f30f299e50e09c2e25d0320ee4bdb557 *man/gl2structure.Rd
b485d2598432bdd8f5c5ad43727866b3 *man/gl2svdquartets.Rd
d89635b96f8f7f6f0eeb13d175020553 *man/gl2treemix.Rd
221fcf8b8485fa9a94b9b6204e5f1c2f *man/is.fixed.Rd
33bf0ca12fbe6c566e025d0f0f060b50 *man/platy.Rd
d067165becd4e9e09c16a900b5d5c2af *man/possums.gl.Rd
9353ea2defda46ffb561e59685205bfd *man/prob.hwe.Rd
9bde0e46d1a73a14367c97d633252151 *man/read.dart.Rd
fe455d6493edad8fea066f52e624d8ee *man/testset.gl.Rd
df3383e83d89c4b43e8ba2daa3396ea5 *man/testset_SNPs_2Row.Rd
d9c5c8a1b47687da01b7b0e7067d9620 *man/testset_metadata.Rd
0dba206984012b586b95531411a50dad *man/testset_pop_recode.Rd
1959a59e47e7d2b7d78fc7686a228f6b *man/util.outflank.MakeDiploidFSTMat.Rd
c63f15047badf7a69d0c3edcf32ae90f *man/util.outflank.Rd
3e7bb684a9e38e31ee73b4627f02494d *man/util.outflank.plotter.Rd
b99e61976ce74e675732004263b3599e *man/utils.hamming.Rd
e63dbc5f71c81aafc88544156937d73a *man/utils.hwe.Rd
2a9504878e411619562cd37d4b71f0af *man/utils.recalc.avgpic.Rd
7d0fae36b6b0ff67712400630fd36acd *man/utils.recalc.callrate.Rd
6da87de6333053bea322df30bbe4f638 *man/utils.recalc.freqhets.Rd
0edbee17500693793a1f5579e7c7703c *man/utils.recalc.freqhomref.Rd
5441122154867e3dcd96aab89b3a38dd *man/utils.recalc.freqhomsnp.Rd
045727c09a64a92229dd3ab53938cf16 *man/utils.recalc.maf.Rd
5eef04afdea093c63022996f577afbb4 *vignettes/IntroTutorial_dartR.Rmd
0983143995961d935b1ab4cbf3fba026 *vignettes/box2.tex
e4bb96c493efeef3800e1107b8920a92 *vignettes/figures/dartRlogo.png
fea969114ad20cf5a799131b280d2e83 *vignettes/figures/dartdata.png
04e899ba527ec1869a6afec5f29547fe *vignettes/figures/dialog_question.png
6babefb37f9e3505eb6d5ab836dff439 *vignettes/figures/ggplotly.png
89b604b461cdac497ce52f37d4180a10 *vignettes/figures/penguin_task.png
f8a54bdabed9448c6f94f0f0030c5f73 *vignettes/figures/plot3d.png
47a7176c793119ce7a09af4d671c8947 *vignettes/figures/tux_info.png
