AAfragSettings          Settings for AA fragments
addMassModif            Add modifications to peptide mass
checkModTy              Check & complete mixed of variable and fixed
                        modifications
combinateAllAndSum      Full combinatorial and cumulative values
countChildrenParent     Identify Children/Parent settings as a+b=c
countPotModifAAs        Make table with counts of potential
                        modification sites
evalIsoFragm            Evaluate selected lines of pepTab (iso-mass)
                        for preferential cutting sites
fragmentSeq             Fragment protein or peptide sequence
identifFixedModif       Identify Fixed Modifications
makeFragments           Make terminal and internal fragments from
                        proteins
plotNTheor              Plot the number of theoretical random fragments
scoreChargeCatch        Scoring of charge catching potential for
                        peptides
