age.apply	age.apply
bar.colors	bar.colors
bootMatrix	bootMatrix
CollapseReplicates	CollapseReplicates
CombinatorialSignificance	CombinatorialSignificance
DiffGenes	DiffGenes
DivergenceExpressionSetExample	DivergenceExpressionSetExample
EarlyConservationTest	EarlyConservationTest
ecScore	ecScore
EnrichmentTest	EnrichmentTest
Expressed	Expressed
FlatLineTest	FlatLineTest
geom.mean	geom.mean
GroupDiffs	GroupDiffs
harm.mean	harm.mean
is.ExpressionSet	is.ExpressionSet
MatchMap	MatchMap
omitMatrix	omitMatrix
PhyloExpressionSetExample	PhyloExpressionSetExample
PlotBarRE	PlotBarRE
PlotCategoryExpr	PlotCategoryExpr
PlotCIRatio	PlotCIRatio
PlotContribution	PlotContribution
PlotCorrelation	PlotCorrelation
PlotDistribution	PlotDistribution
PlotEnrichment	PlotEnrichment
PlotGeneSet	PlotGeneSet
PlotGroupDiffs	PlotGroupDiffs
PlotMeans	PlotMeans
PlotMedians	PlotMedians
PlotPattern	PlotPattern
PlotRE	PlotRE
PlotReplicateQuality	PlotReplicateQuality
PlotSelectedAgeDistr	PlotSelectedAgeDistr
PlotSignature	PlotSignature
PlotVars	PlotVars
pMatrix	pMatrix
pStrata	pStrata
pTAI	pTAI
pTDI	pTDI
RE	RE
ReductiveHourglassTest	ReductiveHourglassTest
REMatrix	REMatrix
reversehourglassScore	reversehourglassScore
ReverseHourglassTest	ReverseHourglassTest
rhScore	rhScore
SelectGeneSet	SelectGeneSet
TAI	TAI
taxid	taxid
taxonomy	taxonomy
TDI	TDI
tf	tf
TPI	TPI
