add_adapters            Add adapters to probes
ann.data                Chlamydia pneumoniae genome annotation.
annotate_probes         Annotate probes
blast.fill              Local BLAST results with added content.
blast.raw               Local BLAST results.
blast_local             Local BLAST
count_PhCh              Calculate physical and chemical properties
cut_probes              Cut probes
cut_string              Cut string into segments
delete_duplicates_DF    Delete rows with duplicated values
fill_blast_result       Complement BLAST result
get_GA_files            Read GISAID sequence file
get_GIs                 Get GenInfo Identifier numbers
get_seq_for_DB          Get nucleotide sequences from NCBI
get_seq_info            Get NCBI sequence record
make_blast_DB           Builds local database for BLAST
make_ids                Create unique identification values
meta.all                Metadata of all available Chlamydia
                        pneumoniae's sequences.
meta.target             Metadata of target Chlamydia pneumoniae's
                        sequences.
normalize_DF            Normalize variable
rate_DF                 Rate variables
read_and_unite_files    Read and unite files
read_from_table_file    Read table file
store_in_DB             Store data in SQLite database
summarize_blast_result
                        Summarize BLAST result
trim_DF                 Trim data frame
unite_NCBI_ac.nums      Assigns master record's id to all project
                        records
unite_two_DF            Combine two data frames
