Package: bioPN
Version: 1.2.0
Date: 2014-03-04
Title: Simulation of deterministic and stochastic biochemical reaction
        networks using Petri Nets
Author: Roberto Bertolusso and Marek Kimmel
Maintainer: Roberto Bertolusso <rbertolusso@rice.edu>
Description: 
  bioPN is a package suited to perform simulation of deterministic and stochastic systems of biochemical reaction
  networks.
  Models are defined using a subset of Petri Nets, in a way that is close at how chemical reactions
  are defined.
  For deterministic solutions, bioPN creates the associated system of differential equations "on the fly", and
  solves it with a Runge Kutta Dormand Prince 45 explicit algorithm.
  For stochastic solutions, bioPN offers variants of Gillespie algorithm, or SSA.
  For hybrid deterministic/stochastic,
  it employs the Haseltine and Rawlings algorithm, that partitions the system in fast and slow reactions.
  bioPN algorithms are developed in C to achieve adequate performance.
NeedsCompilation: yes
License: GPL (>= 2)
Packaged: 2014-03-04 20:41:55 UTC; mame
Repository: CRAN
Date/Publication: 2014-03-04 21:55:07
Built: R 4.2.0; x86_64-apple-darwin17.0; 2022-04-25 08:53:06 UTC; unix
Archs: bioPN.so.dSYM
