add_modules_to_network	add_modules_to_network
add_random_module_to_network	add_random_module_to_network
all_networks_contain_same_modules	all_networks_contain_same_modules
all_networks_contain_same_nodes	all_networks_contain_same_nodes
as_single_module	as_single_module
check_adjacency_cpp	check_adjacency_cpp
components_in_adjacency	components_in_adjacency
connect_module_structure	connect_module_structure
create_cytoscape_file	create_cytoscape_file
create_empty_module	create_empty_module
create_empty_network	create_empty_network
create_modules_for_network	create_modules_for_network
create_module_from_adjacency_matrix	create_module_from_adjacency_matrix
create_module_from_association_matrix	create_module_from_association_matrix
create_network_from_adjacency_matrix	create_network_from_adjacency_matrix
create_network_from_association_matrix	create_network_from_association_matrix
create_network_from_modules	create_network_from_modules
dzinb	dzinb
ecdf_cpp	ecdf_cpp
edges_from_adjacency_cpp	edges_from_adjacency_cpp
est_params_from_reference	est_params_from_reference
gen_gaussian	gen_gaussian
gen_partial_correlations	gen_partial_correlations
gen_rnaseq	gen_rnaseq
gen_zinb	gen_zinb
get_adjacency_matrix	get_adjacency_matrix
get_adjacency_matrix.default	get_adjacency_matrix.default
get_adjacency_matrix.matrix	get_adjacency_matrix.matrix
get_adjacency_matrix.network	get_adjacency_matrix.network
get_adjacency_matrix.network_module	get_adjacency_matrix.network_module
get_association_matrix	get_association_matrix
get_association_matrix.default	get_association_matrix.default
get_association_matrix.matrix	get_association_matrix.matrix
get_association_matrix.network	get_association_matrix.network
get_association_matrix.network_module	get_association_matrix.network_module
get_degree_distribution	get_degree_distribution
get_edge_weights_from_module	get_edge_weights_from_module
get_layout_for_modules	get_layout_for_modules
get_network_arguments	get_network_arguments
get_network_characteristics	get_network_characteristics
get_network_modules	get_network_modules
get_node_names	get_node_names
get_node_names.default	get_node_names.default
get_node_names.matrix	get_node_names.matrix
get_node_names.network	get_node_names.network
get_node_names.network_module	get_node_names.network_module
get_sigma	get_sigma
get_sigma.default	get_sigma.default
get_sigma.matrix	get_sigma.matrix
get_sigma.network	get_sigma.network
get_sigma.network_module	get_sigma.network_module
get_summary_for_node	get_summary_for_node
heatmap_network	heatmap_network
is_PD	is_PD
is_symmetric_cpp	is_symmetric_cpp
is_weighted	is_weighted
is_weighted.default	is_weighted.default
is_weighted.matrix	is_weighted.matrix
is_weighted.network	is_weighted.network
is_weighted.network_module	is_weighted.network_module
perturb_network	perturb_network
plot.network	plot.network
plot.network_module	plot.network_module
plot.network_plot	plot.network_plot
plot_gene_pair	plot_gene_pair
plot_modules	plot_modules
plot_network	plot_network
plot_network_diff	plot_network_diff
plot_network_sim	plot_network_sim
print.network	print.network
print.network_module	print.network_module
print.network_plot	print.network_plot
pzinb	pzinb
qzinb	qzinb
random_module	random_module
random_module_structure	random_module_structure
random_network	random_network
reference	reference
remove_connections	remove_connections
remove_connections.default	remove_connections.default
remove_connections.matrix	remove_connections.matrix
remove_connections.network	remove_connections.network
remove_connections.network_module	remove_connections.network_module
remove_connections_to_node	remove_connections_to_node
remove_connections_to_node.default	remove_connections_to_node.default
remove_connections_to_node.matrix	remove_connections_to_node.matrix
remove_connections_to_node.network	remove_connections_to_node.network
remove_connections_to_node.network_module	remove_connections_to_node.network_module
remove_weights	remove_weights
remove_weights.default	remove_weights.default
remove_weights.matrix	remove_weights.matrix
remove_weights.network	remove_weights.network
remove_weights.network_module	remove_weights.network_module
replace_module_in_network	replace_module_in_network
rewire_connections	rewire_connections
rewire_connections.default	rewire_connections.default
rewire_connections.matrix	rewire_connections.matrix
rewire_connections.network	rewire_connections.network
rewire_connections.network_module	rewire_connections.network_module
rewire_connections_to_node	rewire_connections_to_node
rewire_connections_to_node.default	rewire_connections_to_node.default
rewire_connections_to_node.matrix	rewire_connections_to_node.matrix
rewire_connections_to_node.network	rewire_connections_to_node.network
rewire_connections_to_node.network_module	rewire_connections_to_node.network_module
ring_lattice_cpp	ring_lattice_cpp
rzinb	rzinb
sample_link_nodes	sample_link_nodes
sample_module_nodes	sample_module_nodes
sample_reference_data	sample_reference_data
set_module_edges	set_module_edges
set_module_name	set_module_name
set_module_weights	set_module_weights
set_node_names	set_node_names
update_module_with_random_weights	update_module_with_random_weights
