PlethMorph              Plethodon comparative morphological data
Pupfish                 Landmarks on pupfish
PupfishHeads            Landmarks on pupfish heads
RRPP-package            Linear Model Evaluation with Randomized
                        Residual Permutation Procedures
add.trajectories        Plot Function for RRPP
add.tree                Plot tool to add phylogenetic trees to
                        ordination plots
anova.lm.rrpp           ANOVA for lm.rrpp model fits
classify                Deprecated functions in RRPP
coef.lm.rrpp            coef for lm.rrpp model fits
convert2ggplot          Convert RRPP plots to ggplot objects
fitted.lm.rrpp          Extract fitted values
focusMEonSubjects       Plot Function for RRPP
getANOVAStats           Utility Function for RRPP
getModelCov             Utility Function for RRPP
getModels               Utility Function for RRPP
getPermInfo             Utility Function for RRPP
getResCov               Utility Function for RRPP
getTerms                Utility Function for RRPP
interSubVar             Reveal the inter-subject variability from a
                        measurement error analysis
lm.rrpp                 Linear Model Evaluation with a Randomized
                        Residual Permutation Procedure
lm.rrpp.ws              Linear Model Evaluation with RRPP performed
                        within subjects
logLik.lm.rrpp          Calculate the log-likelihood of a lm.rrpp fit
looCV                   Diagnostic cross-validation tool for ordination
                        based on fitted values
manova.update           MANOVA update for lm.rrpp model fits
measurement.error       Evaluation of measurement error for two or more
                        multivariate measurements, for common research
                        subjects
model.comparison        Model Comparisons, in terms of the
                        log-likelihood, covariance trace, or Z-score.
model.frame.lm.rrpp     Extract model frame from a lm.rrpp object
model.matrix.lm.rrpp    Extract the model design matrix from an lm.rrpp
                        object
motionpaths             Simulated motion paths
na.omit.rrpp.data.frame
                        Handle missing values in rrpp.data.frame
                        objects
ordinate                Ordination tool for data aligned to another
                        matrix
pairwise                Pairwise comparisons of lm.rrpp fits
plot.interSubVar        Plot Function for RRPP
plot.lm.rrpp            Plot Function for RRPP
plot.looCV              Plot Function for RRPP
plot.measurement.error
                        Plot Function for RRPP
plot.model.comparison   Plot Function for RRPP
plot.ordinate           Plot Function for RRPP
plot.predict.lm.rrpp    Plot Function for RRPP
plot.trajectory.analysis
                        Plot Function for RRPP
predict.lm.rrpp         predict for lm.rrpp model fits
prep.lda                Linear discriminant function for lm.rrpp model
                        fits
print.anova.lm.rrpp     Print/Summary Function for RRPP
print.coef.lm.rrpp      Print/Summary Function for RRPP
print.lm.rrpp           Print/Summary Function for RRPP
print.looCV             Print/Summary Function for RRPP
print.measurement.error
                        Print/Summary Function for RRPP
print.model.comparison
                        Print/Summary Function for RRPP
print.ordinate          Print/Summary Function for RRPP
print.pairwise          Print/Summary Function for RRPP
print.predict.lm.rrpp   Print/Summary Function for RRPP
print.summary.lm.rrpp   Print/Summary Function for RRPP
print.summary.manova.lm.rrpp
                        Print/Summary Function for RRPP
print.summary.ordinate
                        Print/Summary Function for RRPP
print.summary.pairwise
                        Print/Summary Function for RRPP
print.summary.trajectory.analysis
                        Print/Summary Function for RRPP
print.trajectory.analysis
                        Print/Summary Function for RRPP
residuals.lm.rrpp       Extract residuals
reveal.model.designs    Reveal model designs used in lm.rrpp fit
rrpp.data.frame         Create a data frame for lm.rrpp analysis
scaleCov                Scaling of a Covariance Matrix
summary.anova.lm.rrpp   Print/Summary Function for RRPP
summary.coef.lm.rrpp    Print/Summary Function for RRPP
summary.lm.rrpp         Print/Summary Function for RRPP
summary.looCV           Print/Summary Function for RRPP
summary.manova.lm.rrpp
                        Print/Summary Function for RRPP
summary.measurement.error
                        Print/Summary Function for RRPP
summary.model.comparison
                        Print/Summary Function for RRPP
summary.ordinate        Print/Summary Function for RRPP
summary.pairwise        Print/Summary Function for RRPP
summary.predict.lm.rrpp
                        Print/Summary Function for RRPP
summary.trajectory.analysis
                        Print/Summary Function for RRPP
terms.lm.rrpp           Extract the terms from an lm.rrpp object
trajectory.analysis     Quantify and compare shape change trajectories
vec.cor.matrix          Support function for RRPP
