RCQC                    RCQC
adap.to.rc              adap.to.rc
add_params              add_params
annotate                evaluate ramSearch, MSFinder mssearch, MSFinder
                        Structure, MSFinder Formula, and findmain
                        output to annotate spectra of ramclustR object
annotation.summary      annotation.summary()
assign.z                assign.z
change.annotation       evaluate ramSearch, MSFinder mssearch, MSFinder
                        Structure, MSFinder Formula, and findmain
                        output to annotate spectra of ramclustR object
check_arguments_filter.blanks
                        check_arguments_filter.blanks
check_arguments_filter.cv
                        check_arguments_filter.cv
check_arguments_replace.na
                        check_arguments_replace.na
checks                  checks
cmpd.summary            cmpd.summary
compute_SpecAbundAve    compute_SpecAbundAve
compute_do.sets         compute_do.sets
compute_wt_mean         compute_wt_mean
create_ramclustObj      create_ramclustObj
defineExperiment        defineExperiment
define_samples          define_samples
do.findmain             do.findmain
export.msfinder.formulas
                        export MSFinder formula prediction results in
                        tabular format.
exportDataset           exportDataset
filter_blanks           filter_blanks
filter_good_features    filter_good_features
filter_signal           filter_signal
find_good_features      find_good_features
findfeature             findfeature
findmass                findmass
fooddb2msfinder         foodb2msfinder
get.taxon.cids          get.taxon.cids
getData                 getData
getSmilesInchi          getSmilesInchi
get_ExpDes              get_ExpDes
get_instrument_platform
                        get_instrument_platform
impRamSearch            impRamSearch
import.adap.kdb         import.adap.kdb
import.msfinder.formulas
                        import.msfinder.formulas
import.msfinder.mssearch
                        import.MSFinder.mssearch
import.msfinder.structures
                        write.methods
import.sirius           import.sirius
manual.annotation.template
                        manual.annotation.template
mean_signal_intensities
                        mean_signal_intensities
mergeRCobjects          mergeRCobjects
normalized_data_batch_qc
                        normalized_data_batch_qc
normalized_data_tic     normalized_data_tic
order_datasets          order_datasets
ramclustR               ramclustR
rc.calibrate.ri         rc.calibrate.ri
rc.cmpd.filter.blanks   rc.cmpd.filter.blanks
rc.cmpd.filter.cv       rc.cmpd.filter.cv
rc.cmpd.get.classyfire
                        getClassyFire
rc.cmpd.get.pubchem     rc.cmpd.get.pubchem
rc.cmpd.get.smiles.inchi
                        getSmilesInchi
rc.cmpd.replace.na      rc.cmpd.replace.na
rc.expand.sample.names
                        rc.expand.sample.names
rc.export.msp.rc        rc.export.msp.rc
rc.feature.filter.blanks
                        rc.feature.filter.blanks
rc.feature.filter.cv    rc.feature.filter.cv
rc.feature.normalize.batch.qc
                        rc.feature.normalize.batch.qc
rc.feature.normalize.qc
                        rc.feature.normalize.qc
rc.feature.normalize.quantile
                        rc.feature.normalize.quantile
rc.feature.normalize.tic
                        rc.feature.normalize.tic
rc.feature.replace.na   rc.feature.replace.na
rc.get.csv.data         rc.get.csv.data
rc.get.df.data          rc.get.df.data
rc.get.xcms.data        rc.get.xcms.data
rc.qc                   rc.qc
rc.ramclustr            rc.ramclustr
rc.remove.qc            rc.remove.qc
rc.restore.qc.samples   rc.restore.qc.samples
remove_blanks           remove_blanks
replace_na              replace_na
write.methods           write.methods
write.msp               write.msp
write_csv               write_csv
