cn.mat                  DNA copy number data from 98 head and neck
                        squamous cell carcinoma (HNSC) patients
cn.region.heatmap       A Function for Creating a Heatmap of DNA Copy
                        Number Data
corr.compute            A Function for Computing a Vector of Pearson
                        Correlation Coefficients
corr.list.compute       A Function for Creating a List of Pearson
                        Correlation Coefficients
data.prep               A Function for Preparing mRNAseq and Copy
                        Number Data Matrices
exp.mat                 Gene expression data from 100 head and neck
                        squamous cell carcinoma (HNSC) patients
gene.annot              Gene annotation data (hg38)
perm.significance       A Function for Computing a Vector of Pearson
                        Correlation Coefficients
perm.significance.list.compute
                        A Function for Creating a List of Pearson
                        Correlation Coefficients
sample.annot            Sample annotation data
smooth.genome.plot      A Function for Plotting Smoothed Pearson
                        Correlation Coefficients Across Multiple
                        Chromosomes
smooth.region.plot      A Function for Plotting Smoothed Pearson
                        Correlation Coefficients Genomewide
tcga.cn.convert         A Function for Reformatting TCGA DNA Copy
                        Number Matrices
tcga.exp.convert        A Function for Reformatting TCGA mRNA
                        Expression Matrices
unsmooth.region.plot    A Function for Plotting Pearson Correlation
                        Coefficients in a Given Genomic Region
