# Generated by roxygen2: do not edit by hand

export(aa.at)
export(aa.comp)
export(aaf)
export(cos2dis)
export(d.phy2df)
export(df2fasta)
export(env.extract)
export(env.fasta)
export(env.matrices)
export(env.sp)
export(envfascpp)
export(envnj)
export(fastaconc)
export(metrics)
export(msa.merge)
export(msa.tree)
export(ncd)
export(ncdnj)
export(ngraMatrix)
export(ngram)
export(otu.space)
export(otu.vector)
export(svdgram)
export(vcos)
export(vdis)
export(vect2tree)
export(vtree)
importFrom(ape,dist.aa)
importFrom(ape,nj)
importFrom(ape,plot.phylo)
importFrom(ape,root)
importFrom(bio3d,get.seq)
importFrom(bio3d,seqaln)
importFrom(bio3d,seqbind)
importFrom(graphics,image)
importFrom(phangorn,upgma)
importFrom(philentropy,distance)
importFrom(seqinr,read.fasta)
importFrom(seqinr,s2c)
importFrom(seqinr,write.fasta)
importFrom(stats,dist)
importFrom(stringr,str_count)
importFrom(stringr,str_which)
importFrom(utils,read.csv)
importFrom(utils,read.csv2)
