EBIquery_allTerm        Query supported terms (phenotypes, studies,
                        tissues) in eQTL catalogue
extractGeneInfo         Extract gene infor of specified genome from
                        gencodeGeneInfoAllGranges
retrieveLD              Retrive SNP pairwise LD from locuscompare
                        database.
retrieveLD_LDproxy      Retrive SNP pairwise LD from LDlink database
xQTLanalyze_coloc       Conduct colocalization analysis with trait
                        genes generated from 'xQTLanalyze_getTraits'
xQTLanalyze_coloc_diy   conduct colocalization analysis with customized
                        xQTL data
xQTLanalyze_getSentinelSnp
                        Detect sentinel SNPs in a given summary
                        statistis dataset.
xQTLanalyze_getTraits   Identify trait genes using sentinel SNPs
                        generated from 'xQTLanalyze_getSentinelSnp'
xQTLanno_calLambda      calculate genomic control inflation factor for
                        a QTL/GWAS summary statistics dataset.
xQTLanno_enrich         enrichment analysis for GWAS / QTL signals in
                        functional elements, including enhancer,
                        promoter, CPG, and TFs
xQTLanno_genomic        annotate all signals in GWAS / QTL dataset by
                        genome location
xQTLdownload_egene      Download details of eGenes (eQTL Genes) for a
                        specified gene or a tissue.
xQTLdownload_eqtlAllAsso
                        Download summary statistics of eQTL of a
                        specified gene, variant, tissue or study.
xQTLdownload_eqtlAllAssoPos
                        Download summary statistics of eQTL with genome
                        position.
xQTLdownload_eqtlExp    Download normalized expression of gene for a
                        eQTL pair.
xQTLdownload_exp        Download normalized gene expression at the
                        sample level in a specified tissue.
xQTLdownload_geneMedExp
                        Download median expression of all samples for
                        specified genes across tissues.
xQTLdownload_sgene      Download details of sGenes (sQTL Genes) for a
                        specified gene or a tissue.
xQTLdownload_sqtlAllAsso
                        download summary statistics of sQTL of a
                        specified gene in GTEx v8.
xQTLdownload_sqtlExp    Download normalized expression of intron for a
                        sQTL pair.
xQTLdownload_xqtlAllAsso
                        Download summary statistics of xQTL of a
                        specified gene in GTEx v8, default:3'aQTL
xQTLquery_eqtl          query multi-tissue eQTL metasoft results
xQTLquery_eqtlSig       Download significant eQTL associations of a
                        specified tissue or across all tissues.
xQTLquery_gene          Query basic information (including name,
                        symbol, position and description, etc. ) of
                        genes.
xQTLquery_geneAll       Fetch details of all genes supported in GTEx.
xQTLquery_sampleBySampleId
                        Query sample's details with samples' IDs.
xQTLquery_sampleByTissue
                        Query sample's details with tissue name
xQTLquery_sqtlSig       Download significant sQTL associations of a
                        tissue or across all tissues
xQTLquery_tissue        Fetch all details of a specified tissue or all
                        tissues
xQTLquery_varId         Query variant in GTEx with variant ID or dbSNP
                        ID
xQTLquery_varPos        Query varints in GTEx using genome position.
xQTLvisual_PZPlot       Compare P-values reported in the association
                        result file to P-values calculated from Z
                        statistics derived from the reported beta and
                        standard error.
xQTLvisual_anno         Visualizing annotated variants
xQTLvisual_coloc        heatmap of LD-p-value of the QTL
xQTLvisual_enrich       Visualizing enriched variants
xQTLvisual_eqtl         Box plot with jittered points for showing
                        number and significance of eQTL associations
xQTLvisual_eqtlExp      Boxplot of normalized expression among
                        genotypes for eQTL.
xQTLvisual_geneExpTissues
                        Violin plot of distribution of the gene
                        expression profiles among multiple tissues.
xQTLvisual_genesExp     Density plot of expression profiles of the gene
xQTLvisual_locusCombine
                        Generate a combined figure including locuszoom
                        and locuscompare plot object.
xQTLvisual_locusCompare
                        Dotplot of comparing regional signals between
                        GWAS and xQTL.
xQTLvisual_locusZoom    Locuszoom plot for visualizing regional signals
                        relative to genomic position with a file of
                        summary statistics
xQTLvisual_manhattan    Advanced CM plot of 11
xQTLvisual_qqPlot       plot quantile-quantile plot with pvalue
xQTLvisual_sqtl         Box plot with jittered points for showing
                        number and significance of sQTL associations
xQTLvisual_sqtlExp      Boxplot of normalized expression among
                        genotypes for sQTL.
