Bilagay                 Data frame containing stable isotope values of
                        Bilagay.
Finnish_Lakes           Data frame of food webs in Inari and Kilpis
                        Lakes (Finland)
Orestias                Named list containing stable isotope values of
                        Orestias chungarensis
Roach                   Data frame of Roach in Lough Neagh
TDF                     Trophic discrimination factors from
                        bibliography
TEF                     Trophic enrichment factors from bibliography
TPmodel                 Function to create a JAGS-based Bayesian model
                        to calculate trophic position
Trout                   Named list containing stable isotope values of
                        Oncorhynchus mykiss
compareTwoDistributions
                        Function to compare two distributions and test
                        a hypothesis, in a Bayesian context
credibilityIntervals    Plot credibility intervals and central tendency
                        descriptor from posterior distributions of
                        trophic position and/or alpha parameter
extractIsotopeData      Extract stable isotope data from a data frame
extractPredictiveData   Function to extract raw data from posterior
                        predictive model-checking distributions
fromParallelTP          Function to extract raw data from parallel
                        calculations of trophic position
generateTPData          A function to generate random stable isotope
                        data for trophic position calculation
getPosteriorMode        Function to get mode from a posterior
                        distribution
jagsBayesianModel       Returns a JAGS-based Bayesian model to use
                        within tRophicPosition.
jagsOneBaseline         Defines a jags Bayesian model to fit a single
                        baseline trophic position model
jagsTwoBaselines        Defines a jags Bayesian model to fit a two
                        baselines trophic position model (without
                        fractionation for C)
jagsTwoBaselinesFull    Defines a jags Bayesian model to fit a two
                        baselines trophic position full model (with
                        fractionation for C)
loadIsotopeData         Extract and load stable isotope data for
                        selected consumers from a data frame
multiModelTP            Multiple model calculation of trophic position
multiSpeciesTP          Multiple species calculation of trophic
                        position
pairwiseComparisons     Function to perform pairwise comparisons
                        between two or more posterior distributions
parametricTP            Parametric trophic position
plot.isotopeData        Plot stable isotope data (2 elements) with one
                        or two baselines
plotMCMC                Internal function that plot a mcmc.list object.
plotTP                  Function to plot a trophic position
                        distribution
posteriorTP             Function to generate posterior samples of a
                        trophic position JAGS model
screenFoodWeb           Function that creates a biplot of a food web
                        with stable isotope values (d13C and d15N)
screenIsotopeData       Function to plot and screen stable isotope data
                        with one or more baselines.
simulateTDF             Simulate trophic discrimination factors
simulateTEF             Simulate trophic enrichment factors
summariseIsotopeData    Function that summarises a data frame
                        containing stable isotope values (d13C and
                        d15N) grouping by Species and FG columns
summary.isotopeData     Summary for stable isotope data
trophicDensityPlot      Function to plot posterior samples of trophic
                        position estimates
