checkDefaultCommands    Check for presence of command-line interfaces
fastqc                  Run FastQC
fastqscreen             Run FastQ Screen
fetch                   Fetch files
fetchMetadata           Fetch metadata for a genomic study
getPlatforms            Get supported microarray platforms
getSalmonMetadata       Aggregrate metadata from salmon quantifications
getTx2gene              Get mapping between transcripts and genes
installCustomCdfPackages
                        Install custom CDF packages
installSysDeps          Install seeker's system dependencies
multiqc                 Run MultiQC
salmon                  Run Salmon
seeker                  Process RNA-seq data end to end
seekerArray             Process microarray data end to end
trimgalore              Run Trim Galore!
tximport                Run tximport on RNA-seq quantifications
