calculatePi	calculatePi
computeReference	computeReference
errorHet	errorHet
Expected_Het	Expected_Het
ExpHet_site	ExpHet_site
findMinor	findMinor
forcePool	forcePool
GetGenotypes	GetGenotypes
getNumReadsR_vector	getNumReadsR_vector
hap2geno	hap2geno
haplo.fix	haplo.fix
Ifreqs	Ifreqs
indProbs	indProbs
indReads	indReads
maeFreqs	maeFreqs
maeHet	maeHet
maePool	maePool
numberReference	numberReference
numberReferencePop	numberReferencePop
Pfreqs	Pfreqs
poolPops	poolPops
poolProbs	poolProbs
poolReads	poolReads
popReads	popReads
popsReads	popsReads
removeSites	removeSites
remove_by_reads	remove_by_reads
remove_by_reads_matrix	remove_by_reads_matrix
run_scrm	run_scrm
set_alpha	set_alpha
simReads	simReads
simulateCoverage	simulateCoverage
splitMatrix	splitMatrix
