Tax4Fun2_KEGG           The KEGG data files used in the cal_tax4fun2
                        function of trans_func class.
clone                   Copy an R6 class object completely
dataset                 The dataset in the microeco package
dropallfactors          Remove all factors in a data frame
env_data_16S            The environmental factors for the 16S dataset
                        in the microeco package
fungi_func_FUNGuild     The FUNGuild database for fungi trait
                        identification in the microeco package
fungi_func_FungalTraits
                        The FungalTraits database for fungi trait
                        identification in the microeco package
microeco                Introduction to microeco package
                        (https://github.com/ChiLiubio/microeco)
microtable              Create 'microtable' object to store and manage
                        all the basic files.
otu_table_16S           The OTU table of the 16S dataset in the
                        microeco package
otu_table_ITS           The OTU table of the ITS dataset in the
                        microeco package
phylo_tree_16S          The phylogenetic tree of 16S dataset in the
                        microeco package
prok_func_FAPROTAX      The modified FAPROTAX trait database in the
                        microeco package
prok_func_NJC19_list    The modified NJC19 database in the microeco
                        package
sample_info_16S         The sample information of 16S dataset in the
                        microeco package
sample_info_ITS         The sample information of ITS dataset in the
                        microeco package
taxonomy_table_16S      The taxonomic information of 16S dataset in the
                        microeco package
taxonomy_table_ITS      The taxonomic information of ITS dataset in the
                        microeco package
tidy_taxonomy           Clean up the taxonomic table to make taxonomic
                        assignments consistent.
trans_abund             Create 'trans_abund' object for plotting
                        taxonomic abundance.
trans_alpha             Create 'trans_alpha' object for alpha diversity
                        statistics and plot.
trans_beta              Create 'trans_beta' object for beta-diversity
                        analysis based on the distance matrix
trans_classifier        Create trans_classifier object for
                        machine-learning-based model prediction.
trans_diff              Create 'trans_diff' object for the differential
                        analysis on the taxonomic abundance
trans_env               Create 'trans_env' object to analyze the
                        effects of environmental factors on
                        communities.
trans_func              Create 'trans_func' object for functional
                        prediction.
trans_network           Create 'trans_network' object for network
                        analysis.
trans_nullmodel         Create 'trans_nullmodel' object for phylogeny-
                        and taxonomy-based null model analysis.
trans_venn              Create 'trans_venn' object for the Venn
                        diagram, petal plot and UpSet plot.
