acealanme               Hills from 30 ns metadynamics of AceAlaNme in
                        water with two collective variables
acealanme1d             Hills from 30 ns metadynamics of AceAlaNme in
                        water with one collective variable
emptyhills              Generate empty HILLS from Plumed
feprof                  Calculate free energy profile for minima object
                        (generic function for 'metadynminer' and
                        'metadynminer3d')
feprof.minima           Calculate free energy profile for minima object
fes                     Calculate free energy surface by Bias Sum
                        algorithm (generic function for 'metadynminer'
                        and 'metadynminer3d')
fes.hillsfile           Calculate free energy surface by Bias Sum
                        algorithm
fes2                    Calculate free energy surface by conventional
                        algorithm (generic function for 'metadynminer'
                        and 'metadynminer3d')
fes2.hillsfile          Calculate free energy surface by conventional
                        algorithm
fes2d21d                Calculate 1D free energy surface from hillsfile
                        object
fesminima               Find free energy minima in the fes object
                        (generic function for 'metadynminer' and
                        'metadynminer3d')
fesminima.fes           Find free energy minima in the fes object
fespoint                Calculate free energy at given point in the CV
                        space (generic function for 'metadynminer' and
                        'metadynminer3d')
fespoint.hillsfile      Calculate free energy at given point in the CV
                        space
head.hillsfile          Print first n lines of hillsfile
lines.fes               Plots 1D free energy surface object as lines
lines.hillsfile         Plot lines for hillsfile object
lines.nebpath           Plot lines for Nudged Elastic Band
linesonfes              Plot lines for Nudged Elastic Band projected
                        onto free energy surface
max.fes                 Calculate maximum of free energy surface
min.fes                 Calculate minimum of free energy surface
neb                     Find transition path on free energy surface by
                        Nudged Elastic Band method
oneminimum              Creates one ad hoc free energy minimum for a
                        fes object (generic function for 'metadynminer'
                        and 'metadynminer3d')
oneminimum.fes          Creates one ad hoc free energy minimum for a
                        fes object
plot.fes                Plot free energy surface object
plot.hillsfile          Plot hillsfile object
plot.minima             Plot minima object
plot.nebpath            Plot Nudged Elastic Band
plot.profiles           Plot free energy profile
plotheights             Plot evolution of heights of hills (generic
                        function for 'metadynminer' and
                        'metadynminer3d')
plotheights.hillsfile   Plot evolution of heights of hills in hillsfile
                        object
points.fes              Plots 1D free energy surface object as points
points.hillsfile        Plot points for hillsfile object
points.nebpath          Plot points for Nudged Elastic Band
pointsonfes             Plot points for Nudged Elastic Band projected
                        onto free energy surface
print.fes               Print dimensionality, minimum and maximum of
                        free energy surface
print.hillsfile         Print hillsfile
print.minima            Print minima object
print.nebpath           Print Nudged Elastic Band minima
print.profiles          Print profiles object
prob                    Calculate probability of free energy surface
read.hills              Read HILLS from Plumed
read.plumed             Read 1D or 2D free energy surface from PLUMED
                        sum_hills
summary.fes             Print summary of free energy surface
summary.hillsfile       Print summary for hillsfile
summary.minima          Print minima object summary
summary.nebpath         Print summary for Nudged Elastic Band
summary.profiles        Print summary for free energy profile
tail.hillsfile          Print last n lines of hillsfile
