aggregateData	aggregateData
annotateClades	annotateClades
annotationMatrix_withSubpopProp	annotationMatrix_withSubpopProp
BSPLeaveCenter	BSPLeaveCenter
constellationPlot	constellationPlot
fmeasure	fmeasure
getAverageSpreadOf2SubpopClades	getAverageSpreadOf2SubpopClades
getExtraneousCladeSubpopulations	getExtraneousCladeSubpopulations
getRepresentativeNetworks	getRepresentativeNetworks
heatmapInput	heatmapInput
JaccardSM	JaccardSM
MAN	MAN
MINetworkPlot_topEdges	MINetworkPlot_topEdges
MINetwork_matrix_topEdges	MINetwork_matrix_topEdges
MINetwork_simplified_topEdges	MINetwork_simplified_topEdges
outputNetworks_topEdges_matrix	outputNetworks_topEdges_matrix
outputRepresentativeNetworks_topEdges	outputRepresentativeNetworks_topEdges
PAC	PAC
recordWithinClusterSpread	recordWithinClusterSpread
refineSubpopulationLabels	refineSubpopulationLabels
renamePrunedSubpopulations	renamePrunedSubpopulations
runElbowPointAnalysis	runElbowPointAnalysis
samplePass	samplePass
