DSAIDE                  DSAIDE: A package to learn about Dynamical
                        Systems Approaches to Infectious Disease
                        Epidemiology
dsaidemenu              The main menu for the DSAIDE package
flu1918data             1918 Influenza mortality data
generate_documentation
                        A helper function which processes and displays
                        the documentation part for each app
generate_fctcall        A helper function that produces a call to a
                        simulator function for specific settings
generate_ggplot         A helper function that takes simulation results
                        and produces ggplot plots
generate_plotly         A helper function that takes simulation results
                        and produces plotly plots
generate_shinyinput     A helper function that takes a model and
                        generates shiny UI elements
generate_text           A helper function that takes result from the
                        simulators and produces text output
norodata                Cases of norovirus during an outbreak
run_model               A function that runs an app for specific
                        settings and processes results for plot and
                        text generation
simulate_Characteristics_of_ID_ode
                        Characteristics of ID
simulate_Complex_ID_Control_ode
                        Complex ID Control
simulate_Drug_Resistance_Evolution_stochastic
                        Drug Resistance Evolution
simulate_Environmental_Transmission_model_ode
                        Environmental Transmission model
simulate_Host_Heterogeneity_Model_ode
                        Host Heterogeneity Model
simulate_SEIRSd_model_stochastic
                        SEIRSd model
simulate_SIRSd_model_ode
                        SIRSd model
simulate_SIRSd_model_stochastic
                        SIRSd model
simulate_SIR_model_discrete
                        SIR model
simulate_SIR_model_ode
                        SIR model
simulate_SIR_modelexploration
                        Simulation to illustrate parameter scan of the
                        basic SIR model with births and deaths #'
simulate_SIR_usanalysis
                        Simulation to illustrate uncertainty and
                        sensitivity analysis
simulate_Vector_transmission_model_ode
                        Vector transmission model
simulate_directtransmission_ode
                        Simulation of a compartmental infectious
                        disease transmission model illustrating
                        different types of direct transmission
simulate_flu_fit        Fitting a SIR-type model to flu data
simulate_idcontrolmultigroup_ode
                        Simulation of a compartmental infectious
                        disease transmission model with 3 types of
                        hosts and intervention
simulate_idcontrolmultioutbreak_ode
                        Simulation of a compartmental infectious
                        disease transmission model to study the
                        reproductive number
simulate_idpatterns_ode
                        Simulation of a compartmental infectious
                        disease transmission model including
                        seasonality
simulate_idsurveillance_ode
                        Simulation of a compartmental infectious
                        disease transmission model illustrating the
                        impact of ID surveillance
simulate_idvaccine_ode
                        Simulation of a compartmental infectious
                        disease transmission model to study the
                        reproductive number
simulate_multipathogen_ode
                        Simulation of a compartmental infectious
                        disease transmission model with 2 types of
                        pathogens
simulate_noro_fit       Fitting a simple SIR type model to norovirus
                        outbreak data
