Package: APackOfTheClones
Type: Package
Title: Visualization of T-Cell Clonal Expansion
Version: 0.1.2
Authors@R: c(person("Qile", "Yang", email = "qile0317@gmail.com", role = c("cre","aut","cph")))
Maintainer: Qile Yang <qile0317@gmail.com>
Description: Visualize T-cell clonal expansion via circle-packing. 'APackOfTheClones' can integrate single-cell RNA sequencing and T-cell receptor libraries from the 10X genomics Single Cell Immune Profiling and Cell Ranger pipeline, to produce a simple, publication-ready visualization of the clonal expansion. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) <doi:10.1126/sciimmunol.abg6356>.
BugReports: https://github.com/Qile0317/APackOfTheClones/issues/
Depends: R (>= 3.5.0)
License: MIT + file LICENSE
Encoding: UTF-8
Language: en-US
LazyData: false
Suggests: covr, knitr, rmarkdown, spelling, testthat (>= 3.0.0), vdiffr
Config/testthat/edition: 3
Imports: data.table, dplyr, ggforce, ggplot2, grDevices, hash, R6,
        rlang, Seurat, stats, utils
RoxygenNote: 7.2.3
URL: https://qile0317.github.io/APackOfTheClones/
NeedsCompilation: no
Packaged: 2023-05-08 13:53:39 UTC; lu_41
Author: Qile Yang [cre, aut, cph]
Repository: CRAN
Date/Publication: 2023-05-09 08:50:08 UTC
Built: R 4.1.2; ; 2023-05-10 11:55:39 UTC; unix
