vanddraabe-package	vanddraabe
aaStandardizeNames	aaStandardizeNames
AlignOverlap	AlignOverlap
BoundWaterEnvironment	BoundWaterEnvironment
BoundWaterEnvironment.interact	BoundWaterEnvironment.interact
BoundWaterEnvironment.quality	BoundWaterEnvironment.quality
BoundWaterEnvPlots	BoundWaterEnvPlots
BoundWaterEnvSummaryPlot	BoundWaterEnvSummaryPlot
BvalueBarplot	BvalueBarplot
BvalueBarplot.summ	BvalueBarplot.summ
CalcAlignOverlap	CalcAlignOverlap
calcAtomClassHydrophilicity	calcAtomClassHydrophilicity
calcAtomHydrationEstimate	calcAtomHydrationEstimate
calcBvalue	calcBvalue
calcNearbyHydrationFraction	calcNearbyHydrationFraction
calcNumHydrogenBonds	calcNumHydrogenBonds
check.cluster.method	check.cluster.method
CleanProteinStructures	CleanProteinStructures
ClusterSummaryPlots	ClusterSummaryPlots
ClusterWaters	ClusterWaters
ClusterWaters.MDS	ClusterWaters.MDS
colorPalettes	colorPalettes
ConservationPlot	ConservationPlot
ConservationSet	ConservationSet
ConservedWaters	ConservedWaters
ConservedWaters.MDS	ConservedWaters.MDS
ConservedWaterStats	ConservedWaterStats
CreatePyMOLscript	CreatePyMOLscript
DetermineChainsOfInterest	DetermineChainsOfInterest
ExtractFileTimeStamp	ExtractFileTimeStamp
ExtractPDBids	ExtractPDBids
FileTimeStamp	FileTimeStamp
FreeSASA.diff	FreeSASA.diff
FreeSASAcheck	FreeSASAcheck
getAtomTypeCounts	getAtomTypeCounts
getProtAtomsNearWater	getProtAtomsNearWater
getRCSBdata	getRCSBdata
getResidueData	getResidueData
getResTypeCounts	getResTypeCounts
HasXWaters	HasXWaters
HydrophilicityEvaluation	HydrophilicityEvaluation
HydrophilicityTable	HydrophilicityTable
Mobility	Mobility
MobilityBarplot	MobilityBarplot
MobilityBarplot.summ	MobilityBarplot.summ
MobNormBvalEvalPlots	MobNormBvalEvalPlots
names.backbone.atoms	names.backbone.atoms
names.polar.atoms	names.polar.atoms
names.res.AtomTypes	names.res.AtomTypes
names.resATs.carb.sulf	names.resATs.carb.sulf
names.resATs.nitro.neut	names.resATs.nitro.neut
names.resATs.nitro.pos	names.resATs.nitro.pos
names.resATs.oxy.neg	names.resATs.oxy.neg
names.resATs.oxy.neut	names.resATs.oxy.neut
names.residues	names.residues
names.sidechain.atoms	names.sidechain.atoms
names.waters	names.waters
nBvalueBarplot	nBvalueBarplot
Nearby	Nearby
NormalizedBvalue	NormalizedBvalue
normBvalueBarplot.summ	normBvalueBarplot.summ
OccupancyBarplot	OccupancyBarplot
OccupancyBarplot.summ	OccupancyBarplot.summ
openxlsxCellStyles	openxlsxCellStyles
oxAlignOverlapSheet	oxAlignOverlapSheet
oxClusterStatsSheet	oxClusterStatsSheet
oxClusterSummarySheet	oxClusterSummarySheet
oxInitWaterDataSheet	oxInitWaterDataSheet
oxPDBcleanedSummarySheet	oxPDBcleanedSummarySheet
oxPlainDataSheet	oxPlainDataSheet
oxRCSBinfoSheet	oxRCSBinfoSheet
oxWaterOccurrenceSheet	oxWaterOccurrenceSheet
PDB.1ecd	PDB.1ecd
PDB.5rxn	PDB.5rxn
ProtHetWatIndices	ProtHetWatIndices
RemoveHydrogenAtoms	RemoveHydrogenAtoms
RemoveModeledAtoms	RemoveModeledAtoms
RemoveOoR.b	RemoveOoR.b
RemoveOoR.o	RemoveOoR.o
res2xyz	res2xyz
resAtomType2AtomClass	resAtomType2AtomClass
RescaleValues	RescaleValues
RetainChainsOfInterest	RetainChainsOfInterest
RetainWatersWithinX	RetainWatersWithinX
ReturnPDBfullPath	ReturnPDBfullPath
StandardizeAsparticAcidNames	StandardizeAsparticAcidNames
StandardizeCysteineNames	StandardizeCysteineNames
StandardizeGlutamicAcidNames	StandardizeGlutamicAcidNames
StandardizeHistidineNames	StandardizeHistidineNames
StandardizeLysineNames	StandardizeLysineNames
thrombin.1hai	thrombin.1hai
thrombin10.PDBs.align	thrombin10.PDBs.align
TimeSpan	TimeSpan
UniqueAtomHashes	UniqueAtomHashes
vanddraabe	vanddraabe
write.basic.pdb	write.basic.pdb
write.conservedWaters.pdb	write.conservedWaters.pdb
