checkIfGainOrLoseAfterAlt	checkIfGainOrLoseAfterAlt
checkIfGainOrLoseAfterAltOneVariant	checkIfGainOrLoseAfterAltOneVariant
checkIfLostCodonAfterAlt	checkIfLostCodonAfterAlt
checkIfLostCodonAfterAltOneVariant	checkIfLostCodonAfterAltOneVariant
checkIfRefMatchAndAltFragment	checkIfRefMatchAndAltFragment
checkInputValid	checkInputValid
concatenateAnnotationResult	concatenateAnnotationResult
countDNAPattern	countDNAPattern
countDNAPatternInAlt	countDNAPatternInAlt
countDNAPatternInAltOneVariant	countDNAPatternInAltOneVariant
countDNAPatternOneVariant	countDNAPatternOneVariant
createEnsDbFromAH	createEnsDbFromAH
getAltSequence	getAltSequence
getCodon	getCodon
getCodonInAlt	getCodonInAlt
getCodonInAltOneVariant	getCodonInAltOneVariant
getCodonOneVariant	getCodonOneVariant
getEnsembl	getEnsembl
getFeatureFromInfo	getFeatureFromInfo
getKozakPWM	getKozakPWM
getKozakScore	getKozakScore
getKozakScoreOneVariant	getKozakScoreOneVariant
getLatestEnsemblVersion	getLatestEnsemblVersion
getOrgName	getOrgName
getRegionsForDiscretePos	getRegionsForDiscretePos
getSeqTable	getSeqTable
getTranscriptIds	getTranscriptIds
getTranscriptIdsForCodonVariants	getTranscriptIdsForCodonVariants
getTranscriptIdsForOneCodonVariant	getTranscriptIdsForOneCodonVariant
getTranscriptIdsForOneTSSKozakVariant	getTranscriptIdsForOneTSSKozakVariant
getTranscriptIdsForOneUTRVariant	getTranscriptIdsForOneUTRVariant
getTranscriptIdsForTSSKozakVariants	getTranscriptIdsForTSSKozakVariants
getTranscriptIdsForUTRVariants	getTranscriptIdsForUTRVariants
getTranscriptIdsOneVariant	getTranscriptIdsOneVariant
getTrasncriptsRegions	getTrasncriptsRegions
getTSSKozak	getTSSKozak
getTSSKozakOneVariant	getTSSKozakOneVariant
get_conservation_scores	get_conservation_scores
initUTRAnnotation	initUTRAnnotation
init_backend	init_backend
inverse_transform	inverse_transform
one_hot_encode	one_hot_encode
partitionVariantFile	partitionVariantFile
predictMRL	predictMRL
predictMRLInAlt	predictMRLInAlt
predictMRLInAltOneVariant	predictMRLInAltOneVariant
predictMRLOneVariant	predictMRLOneVariant
queryEnsemblInfo	queryEnsemblInfo
readVariantData	readVariantData
readVCFData	readVCFData
runUTRAnnotation	runUTRAnnotation
splitRowsIfMultiFeature	splitRowsIfMultiFeature
validateTranscripts	validateTranscripts
