snpEnrichment-package	snpEnrichment-package
.checkFilePath	snpEnrichment-internal
.checkSignalFile	snpEnrichment-internal
.checkSnpInfoDir	snpEnrichment-internal
.checkSnpListDir	snpEnrichment-internal
.checkTranscript	snpEnrichment-internal
.Chromosome.show	snpEnrichment-internal
.cleanTmpDir	snpEnrichment-internal
.compareEnrich	snpEnrichment-internal
.Enrichment.show	snpEnrichment-internal
.enrichmentRatio	snpEnrichment-internal
.EnrichSNP.show	snpEnrichment-internal
.readFiles	snpEnrichment-internal
.readFreq	snpEnrichment-internal
.readLD	snpEnrichment-internal
.readSignal	snpEnrichment-internal
.readSNP	snpEnrichment-internal
.readTranscript	snpEnrichment-internal
.reSample	snpEnrichment-internal
.showArgs	snpEnrichment-internal
.splitByChrom	snpEnrichment-internal
.verbose	snpEnrichment-internal
.writeFreq	snpEnrichment-internal
.writeSignal	snpEnrichment-internal
Chromosome	Chromosome-class
chromosome	Chromosome-class
chromosome,ANY-method	Chromosome-class
Chromosome-class	Chromosome-class
chromosome-methods	Chromosome-class
compareEnrichment	compareEnrichment
compareEnrichment,ANY-method	compareEnrichment
compareEnrichment,Enrichment,Enrichment,ANY-method	compareEnrichment
compareEnrichment-methods	compareEnrichment
computeER	snpEnrichment-internal
computeER,ANY-method	snpEnrichment-internal
computeER,Chromosome-method	snpEnrichment-internal
computeER,Enrichment-method	snpEnrichment-internal
Enrichment	Enrichment-class
enrichment	Enrichment-class
enrichment,ANY-method	Enrichment-class
Enrichment-class	Enrichment-class
enrichment-methods	Enrichment-class
EnrichSNP	EnrichSNP-class
enrichSNP	snpEnrichment-internal
enrichSNP,ANY-method	snpEnrichment-internal
EnrichSNP-class	EnrichSNP-class
enrichSNP-methods	snpEnrichment-internal
excludeSNP	excludeSNP-methods
excludeSNP,ANY-method	excludeSNP-methods
excludeSNP,Enrichment-method	excludeSNP-methods
excludeSNP-methods	excludeSNP-methods
GC	GC
getEnrichSNP	getEnrichSNP-methods
getEnrichSNP,ANY-method	getEnrichSNP-methods
getEnrichSNP,Enrichment-method	getEnrichSNP-methods
getEnrichSNP-methods	getEnrichSNP-methods
initFiles	initFiles
is.chromosome	is.chromosome
is.chromosome,ANY-method	is.chromosome
is.chromosome-methods	is.chromosome
is.enrichment	is.enrichment
is.enrichment,ANY-method	is.enrichment
is.enrichment-methods	is.enrichment
is.EnrichSNP	snpEnrichment-internal
is.EnrichSNP,ANY-method	snpEnrichment-internal
is.EnrichSNP-methods	snpEnrichment-internal
mclapply2	mclapply2
plot	plot-methods
plot,Enrichment,ANY-method	plot-methods
plot,Enrichment-method	plot-methods
plot-methods	plot-methods
print	print-methods
print,Chromosome-method	print-methods
print,Enrichment-method	print-methods
print,EnrichSNP-method	EnrichSNP-class
print-methods	print-methods
readEnrichment	readEnrichment
reSample	reSample-methods
reSample,ANY-method	reSample-methods
reSample,Chromosome-method	reSample-methods
reSample,Enrichment-method	reSample-methods
reSample-methods	reSample-methods
reset	snpEnrichment-internal
reset,ANY-method	snpEnrichment-internal
reset,Chromosome,ANY-method	snpEnrichment-internal
reset,Chromosome-method	snpEnrichment-internal
reset,Enrichment,ANY-method	snpEnrichment-internal
reset,Enrichment-method	snpEnrichment-internal
reset,EnrichSNP,ANY-method	snpEnrichment-internal
reset,EnrichSNP-method	snpEnrichment-internal
reset-methods	snpEnrichment-internal
show,Chromosome-method	Chromosome-class
show,Enrichment-method	Enrichment-class
show,EnrichSNP-method	EnrichSNP-class
snpEnrichment	snpEnrichment-package
toyEnrichment	toyEnrichment-dataset
toyEnrichment-dataset	toyEnrichment-dataset
transcript	transcript-dataset
transcript-dataset	transcript-dataset
writeLD	writeLD
[,Chromosome,ANY,ANY,ANY-method	Chromosome-class
[,Chromosome-method	Chromosome-class
[,Enrichment,ANY,ANY,ANY-method	Enrichment-class
[,Enrichment-method	Enrichment-class
[,EnrichSNP,ANY,ANY,ANY-method	EnrichSNP-class
[,EnrichSNP-method	EnrichSNP-class
[<-,Chromosome,ANY,ANY,ANY-method	Chromosome-class
[<-,Chromosome-method	Chromosome-class
[<-,Enrichment,ANY,ANY,ANY-method	Enrichment-class
[<-,Enrichment-method	Enrichment-class
[<-,EnrichSNP,ANY,ANY,ANY-method	EnrichSNP-class
[<-,EnrichSNP-method	EnrichSNP-class
