Chromosome-class        Class 'Chromosome'
EnrichSNP-class         Class '"EnrichSNP"'
Enrichment-class        Class 'Enrichment'
GC                      Full Garbage Collection
compareEnrichment       Compare enrichment analysis between two SNPs
                        list
excludeSNP              Exclude SNPs from Enrichment analysis
getEnrichSNP            Get all eSNP/xSNP which are enriched
initFiles               Initialize files for enrichment analysis
is.chromosome           Is an Chromosome object
is.enrichment           Is an Enrichment object
mclapply2               Parallel Versions of 'lapply' with cores and
                        memory control
plot-methods            Plot method (S4) for 'Enrichment' object
print-methods           Print method (S4)
reSample                Compute enrichment analysis on an 'Enrichment'
                        object
readEnrichment          Read and create EnrichmentRatio object
snpEnrichment-package   ~ Overview: SNPs enrichment analysis ~
toyEnrichment-dataset   Toy dataset with SNP data
transcript-dataset      Transcript information in order to check the
                        CIS status for SNPs
writeLD                 Linkage Disequilibrium (LD) computation with
                        PLINK
