CV                      compute CV for each row in matrix
CVlog                   geometric coefficient of variation (CV for log
                        transformed data) Typically used to create and
                        violin plot
ProgenesisBuildAnnotation
                        build annotation from column names
ProgenesisRead          reads file exportet from progenesis
                        ProgenesisRead
addSpecialProteins      add special labels
altmanbland             altman-bland plot
colNAs                  get NR of NA's per matrix or data.frame column
dat2Matrix              converts sparse representation to dense where
                        row and col can be character vectors
determineCut            determine best Accuracy cuttoff
distmy                  distance among matrix columns with freely
                        choosable distance function
filterSignificant       filters significant values and returns them as
                        list of data.frames
fisherExact             get p-values using fishers exact test for count
                        data
getBlueScale            create blue color scale
getBlueWhiteRed         create blue white red palette
getDiv                  create divergent palette
getGreensScale          create green color scale
getRedScale             create red color scale
getTValuesForVolcano    get p-values of t-test values for volcano
getWRValuesForVolcano   get p-values of wilcoxon rank sum test for
                        volcano
imageColorscale         if you need an colorscale to you imagelables
                        use this
imageWithLabels         image plot with labels
imageWithLabelsNoLayout
                        image plot with labels
image_nan               Copy of
                        http://stackoverflow.com/questions/20977477/how-to-assign-a-specific-color-to-na-in-an-image-plot
jackknifeMatrix         Compute correlation matrix with jack
makeROCplot             create density plots of cases and controls and
                        ROC plot
matrix_to_tibble        Matrix to tibble (taken from tidyquant)
multigroupFCDATA        example data from multigroup analysis
multigroupVolcano       plot volcano given multiple conditions
my_jackknife            copute jack knive
mypairs                 normal pairs plot with different pch and plus
                        abline
mypairsSmooth           smoothScatter pairs
onesamplegreaterT       One sample single sided t-test on matrix
pairsQQ                 pairsplot of QQ plots
panel.cor               correlation panel for pairs plot function (used
                        as default in mypairsSmooth)
panel.hist              histogram panel for pairs function (used as
                        default in mypairsSmooth)
plotOneSideVolcano      Plot and filter data coming from one sample
                        single sided t-test
pvalCorMat              pvalues for correlation matrix -
quantable               Streamline descriptive analysis of quantitative
                        data matrices
removeDecorrelated      remove decorrelated rows
removeNArows            Removes rows with more than thresh NA's from
                        matrix
robustscale             robust scaling uses median an mad instead of
                        mean and row applies the scaling to the columns
                        (samples) by default
rowNAs                  get NR of NA's per matrix or data.frame row
runFun                  running function (default median absolute
                        deviation)
runTICscale             running total ion count scaling (TIC)
runrobscale             running robust scaling of arefw
scaleByGroup            scale data given group
setdiff_data.frame      setdiff for data frames
simpleheatmap           heatmap2 facade
split2table             splits names and creates a matrix
sumtop                  sums top rows of matrix uses median of row to
                        determine row order
unpivot                 unpivot data matrix
uppertriang             get values of upper triangle from matrix
volcano2G               DEPRECATED Volcano plot using ggplot and
                        ggrepel
volcano2GB              Volcano with more control
volcanoplot             volcano plot
write.tab               write table in tab delimited no quotes no
                        row.names (usefull for exporting i.e. list of
                        foldchanges) uses write.table TODO : validate
                        if not redundant with other write functions
write.vector            write vectors as single column table (usefull
                        for exporting i.e. protein id's) uses
                        write.table
xxx_replace_xxx         replace patterns (vector) with replacements
                        (vector) in string or string vector. uses gsub
                        and perl=TRUE taken from <URL:
                        https://stackoverflow.com/questions/26676045>
