%>%                     Pipe operator
%T>%                    Tee operator
ArrayParameter-class    Array parameter prototype
Collection-class        Collection prototype
ConservationModifier-class
                        Conservation problem modifier prototype
ConservationProblem-class
                        Conservation problem class
Constraint-class        Constraint prototype
Decision-class          Decision prototype
MiscParameter-class     Miscellaneous parameter prototype
Objective-class         Objective prototype
OptimizationProblem-class
                        Optimization problem class
OptimizationProblem-methods
                        Optimization problem methods
Parameter-class         Parameter class
Parameters-class        Parameters class
Penalty-class           Penalty prototype
Portfolio-class         Portfolio prototype
ScalarParameter-class   Scalar parameter prototype
Solver-class            Solver prototype
Target-class            Target prototype
add_absolute_targets    Add absolute targets
add_binary_decisions    Add binary decisions
add_boundary_penalties
                        Add boundary penalties
add_cbc_solver          Add a _CBC_ solver
add_connectivity_penalties
                        Add connectivity penalties
add_contiguity_constraints
                        Add contiguity constraints
add_cplex_solver        Add a _CPLEX_ solver
add_cuts_portfolio      Add Bender's cuts portfolio
add_default_decisions   Add default decisions
add_default_solver      Add a default solver
add_extra_portfolio     Add an extra portfolio
add_feature_contiguity_constraints
                        Add feature contiguity constraints
add_feature_weights     Add feature weights
add_gap_portfolio       Add a gap portfolio
add_gurobi_solver       Add a _Gurobi_ solver
add_linear_constraints
                        Add linear constraints
add_linear_penalties    Add linear penalties
add_locked_in_constraints
                        Add locked in constraints
add_locked_out_constraints
                        Add locked out constraints
add_loglinear_targets   Add targets using log-linear scaling
add_lsymphony_solver    Add a _SYMPHONY_ solver with _lpsymphony_
add_mandatory_allocation_constraints
                        Add mandatory allocation constraints
add_manual_bounded_constraints
                        Add manually specified bound constraints
add_manual_locked_constraints
                        Add manually specified locked constraints
add_manual_targets      Add manual targets
add_max_cover_objective
                        Add maximum coverage objective
add_max_features_objective
                        Add maximum feature representation objective
add_max_phylo_div_objective
                        Add maximum phylogenetic diversity objective
add_max_phylo_end_objective
                        Add maximum phylogenetic endemism objective
add_max_utility_objective
                        Add maximum utility objective
add_min_largest_shortfall_objective
                        Add minimum largest shortfall objective
add_min_set_objective   Add minimum set objective
add_min_shortfall_objective
                        Add minimum shortfall objective
add_neighbor_constraints
                        Add neighbor constraints
add_proportion_decisions
                        Add proportion decisions
add_relative_targets    Add relative targets
add_rsymphony_solver    Add a _SYMPHONY_ solver with _Rsymphony_
add_semicontinuous_decisions
                        Add semi-continuous decisions
add_shuffle_portfolio   Add a shuffle portfolio
add_top_portfolio       Add a top portfolio
adjacency_matrix        Adjacency matrix
array_parameters        Array parameters
as.Id                   Coerce object to another object
as.list.OptimizationProblem
                        Convert 'OptimizationProblem' to list
binary_stack            Binary stack
boundary_matrix         Boundary matrix
branch_matrix           Branch matrix
category_layer          Category layer
category_vector         Category vector
compile                 Compile a problem
connectivity_matrix     Connectivity matrix
constraints             Conservation problem constraints
decisions               Add decision types
distribute_load         Distribute load
eval_boundary_summary   Evaluate solution boundary length
eval_connectivity_summary
                        Evaluate solution connectivity
eval_cost_summary       Evaluate solution cost
eval_feature_representation_summary
                        Evaluate feature representation
eval_ferrier_importance
                        Evaluate solution importance using Ferrier
                        scores
eval_n_summary          Evaluate number of planning units selected
eval_rare_richness_importance
                        Evaluate solution importance using rarity
                        weighted richness scores
eval_replacement_importance
                        Evaluate solution importance using replacement
                        cost scores
eval_target_coverage_summary
                        Evaluate target coverage
fast_extract            Fast extract
feature_abundances      Feature abundances
feature_names           Feature names
importance              Evaluate solution importance
intersecting_units      Find intersecting units
is.Id                   Is it?
loglinear_interpolation
                        Log-linear interpolation
marxan_boundary_data_to_matrix
                        Convert _Marxan_ boundary data to a matrix
                        format
marxan_problem          _Marxan_ conservation problem
matrix_parameters       Matrix parameters
misc_parameter          Miscellaneous parameter
new_id                  Identifier
new_optimization_problem
                        Optimization problem
new_waiver              Waiver
number_of_features      Number of features
number_of_planning_units
                        Number of planning units
number_of_total_units   Number of total units
number_of_zones         Number of zones
objectives              Add an objective
parameters              Parameters
penalties               Add a penalty
portfolios              Solution portfolios
pproto                  Create a new 'pproto' object
predefined_optimization_problem
                        Predefined optimization problem
presolve_check          Presolve check
print                   Print
prioritizr              prioritizr: Systematic Conservation
                        Prioritization in R
prioritizr-deprecated   Deprecation notice
problem                 Conservation planning problem
proximity_matrix        Proximity matrix
rij_matrix              Feature by planning unit matrix
run_calculations        Run calculations
scalar_parameters       Scalar parameters
show                    Show
sim_data                Simulated conservation planning data
simulate_cost           Simulate cost data
simulate_data           Simulate data
simulate_species        Simulate species habitat suitability data
solve                   Solve
solvers                 Problem solvers
summaries               Evaluate solutions using summary statistics
targets                 Add representation targets
tibble-methods          Manipulate tibbles
write_problem           Write problem
zone_names              Zone names
zones                   Management zones
