TransPhylo-package	TransPhylo-package
as.mcmc.resTransPhylo	as.mcmc.resTransPhylo
computeMatTDist	computeMatTDist
computeMatWIW	computeMatWIW
consTTree	consTTree
convertToCoda	convertToCoda
dateLastSample	dateLastSample
extractCTree	extractCTree
extractPTree	extractPTree
extractTTree	extractTTree
getGenerationTimeDist	getGenerationTimeDist
getIncidentCases	getIncidentCases
getInfectionTimeDist	getInfectionTimeDist
getOffspringDist	getOffspringDist
getSamplingTimeDist	getSamplingTimeDist
inferTTree	inferTTree
infer_multittree_share_param	infer_multittree_share_param
makeCTreeFromPTree	makeCTreeFromPTree
makeTTree	makeTTree
medTTree	medTTree
phyloFromPTree	phyloFromPTree
plot.ctree	plot.ctree
plot.ptree	plot.ptree
plot.resTransPhylo	plot.resTransPhylo
plot.ttree	plot.ttree
plotCTree	plotCTree
plotTraces	plotTraces
plotTTree	plotTTree
plotTTree2	plotTTree2
print.ctree	print.ctree
print.ptree	print.ptree
print.resTransPhylo	print.resTransPhylo
print.ttree	print.ttree
probPTreeGivenTTree	probPTreeGivenTTree
probPTreeGivenTTreeR	probPTreeGivenTTreeR
probTTree	probTTree
probTTreeR	probTTreeR
ptreeFromPhylo	ptreeFromPhylo
selectTTree	selectTTree
simulateOutbreak	simulateOutbreak
summary.resTransPhylo	summary.resTransPhylo
TransPhylo	TransPhylo-package
