# Generated by roxygen2: do not edit by hand

S3method(get_adjacency_matrix,default)
S3method(get_adjacency_matrix,matrix)
S3method(get_adjacency_matrix,network)
S3method(get_adjacency_matrix,network_module)
S3method(get_association_matrix,default)
S3method(get_association_matrix,matrix)
S3method(get_association_matrix,network)
S3method(get_association_matrix,network_module)
S3method(get_node_names,default)
S3method(get_node_names,matrix)
S3method(get_node_names,network)
S3method(get_node_names,network_module)
S3method(get_sigma,default)
S3method(get_sigma,matrix)
S3method(get_sigma,network)
S3method(get_sigma,network_module)
S3method(is_weighted,default)
S3method(is_weighted,matrix)
S3method(is_weighted,network)
S3method(is_weighted,network_module)
S3method(plot,network)
S3method(plot,network_module)
S3method(plot,network_plot)
S3method(print,network)
S3method(print,network_module)
S3method(print,network_plot)
S3method(remove_connections,default)
S3method(remove_connections,matrix)
S3method(remove_connections,network)
S3method(remove_connections,network_module)
S3method(remove_connections_to_node,default)
S3method(remove_connections_to_node,matrix)
S3method(remove_connections_to_node,network)
S3method(remove_connections_to_node,network_module)
S3method(remove_weights,default)
S3method(remove_weights,matrix)
S3method(remove_weights,network)
S3method(remove_weights,network_module)
S3method(rewire_connections,default)
S3method(rewire_connections,matrix)
S3method(rewire_connections,network)
S3method(rewire_connections,network_module)
S3method(rewire_connections_to_node,default)
S3method(rewire_connections_to_node,matrix)
S3method(rewire_connections_to_node,network)
S3method(rewire_connections_to_node,network_module)
export(add_random_module_to_network)
export(as_single_module)
export(check_adjacency_cpp)
export(components_in_adjacency)
export(connect_module_structure)
export(create_cytoscape_file)
export(create_empty_module)
export(create_empty_network)
export(create_module_from_adjacency_matrix)
export(create_module_from_association_matrix)
export(create_modules_for_network)
export(create_network_from_adjacency_matrix)
export(create_network_from_association_matrix)
export(create_network_from_modules)
export(dzinb)
export(ecdf_cpp)
export(edges_from_adjacency_cpp)
export(est_params_from_reference)
export(gen_gaussian)
export(gen_partial_correlations)
export(gen_rnaseq)
export(gen_zinb)
export(get_adjacency_matrix)
export(get_association_matrix)
export(get_degree_distribution)
export(get_edge_weights_from_module)
export(get_network_characteristics)
export(get_network_modules)
export(get_node_names)
export(get_sigma)
export(get_summary_for_node)
export(heatmap_network)
export(is_symmetric_cpp)
export(is_weighted)
export(perturb_network)
export(plot_gene_pair)
export(plot_modules)
export(plot_network)
export(plot_network_diff)
export(plot_network_sim)
export(pzinb)
export(qzinb)
export(random_module)
export(random_module_structure)
export(random_network)
export(remove_connections)
export(remove_connections_to_node)
export(remove_weights)
export(rewire_connections)
export(rewire_connections_to_node)
export(ring_lattice_cpp)
export(rzinb)
export(sample_link_nodes)
export(sample_module_nodes)
export(sample_reference_data)
export(set_module_name)
export(set_node_names)
export(update_module_with_random_weights)
importFrom(Rcpp,sourceCpp)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,gray.colors)
importFrom(grDevices,palette.colors)
importFrom(grDevices,rgb)
importFrom(graphics,legend)
importFrom(graphics,plot)
importFrom(methods,is)
importFrom(rlang,.data)
importFrom(stats,cov2cor)
importFrom(stats,dnbinom)
importFrom(stats,ecdf)
importFrom(stats,heatmap)
importFrom(stats,pbeta)
importFrom(stats,pnbinom)
importFrom(stats,pnorm)
importFrom(stats,qnbinom)
importFrom(stats,quantile)
importFrom(stats,rbinom)
importFrom(stats,rnbinom)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(utils,data)
importFrom(utils,write.table)
useDynLib(SeqNet)
