Interactions            Calculating the species interactions
KosarajuSCC             Caculating the strong connected components
                        (SCC) of a network
RefDbcache              Reference data for global metabolic
                        construction The reference metabolic pathway
                        data contains KOs, substrates and products, as
                        well as a constructed reference global network,
                        which used for metabolic network reconstruction
RevEcoR                 The RevEcoR package
anno.species            Annotation profiles of seven well-studied oral
                        species
calculateCooperationIndex
                        Calculating the metabolic competition and
                        complementarity index
compose                 Compose multiple functions
confidencescore-methods
                        Conficence score
getGsMN-methods         The genome scale metabolic network
getOrgMetabolicData     Get organism metabolic data from KEGG database
getSeedSets             Identify seed compounds of each organism
gut_microbiome          Annotation profiles of 116 gut prevalent
                        species
kegg_buc                Metabolic profiles of KEGG organism Buchnera
                        aphidicola APS (Acyrthosiphon pisum) (KEGG
                        organism code: buc)
kegg_ptr                Metabolic profiles of KEGG organism Pan
                        troglodytes (chimpanzee) (KEGG organism code:
                        ptr)
len-methods             the length of the seed set
nonseed-methods         Non seed of the network
reconstructGsMN         Reconstuction of the specific-organism
                        genome-scale metabolic network
seedSize-methods        Size of the each seed source component
seedset-class           'seedset-class'
show,seedset-method     The show generic function
