%f>%                    Function pipe for nm objects
NONMEM_version          NONMEM version info
add_mixed_param         Add a mixed effect parameter to $PK (or $PRED)
add_remove_covs         Add/remove a covariate to a NONMEM model
append_nonmem_var       Include NONMEM variables in output table
apply_manual_edit       Apply a manual edit patch
bind_covariate_results
                        Add run results into a covariate tibble
block-omega-sigma       Create or remove $OMEGA/$SIGMA BLOCKs
child                   Make child nm object from parent
code_library            Code Library
coef_widelong           Extract parameter values
comment_lines           Comment and uncomment lines of control file
cond_num                Condition number of run
convert_to_simulation   Convert a NONMEM run to a simulation
cov_cov_plot            Plot correlation between two covariates
cov_forest_data         Produce dataset for covariate forest plotting
cov_forest_plot         Plot covariate forest plots
covariance_plot         Plot $COV matrix
covariate_step_tibble   Prepare forward covariate step
ctl_contents            Get/set control file contents
ctl_path                Get and set path to NONMEM control file
data_path               Get/set path to dataset
decision                Make decision point
delete_dollar           Delete a NONMEM subroutine from control file
                        contents
dollar                  Get/set existing subroutine
dollar_subroutine       Get/set $SUBROUTINE values in control file
exclude_rows            Exclude rows of NONMEM dataset
fill_input              Fill $INPUT
find_nonmem             Find location of NONMEM installation
gsub_ctl                Pattern replacement for control file contents
ignore                  Get/set ignore statement from control file
                        contents
import                  Import staged files into project
init_theta              Get/set initial parameters
input_data              Read input dataset of an nm object
insert_dollar           Insert a new subroutine into control
                        file_contents
is_finished             Tests if job is finished
is_nm                   Test if object is an nm coercible object
is_nmproject_dir        Is the directory an NMproject directory
is_successful           Test if NONMEM ran without errors
job_stats               Get job stats for a completed NONMEM run
ls_code_library         List files in code library
ls_scripts              List scripts
make_OCC_every_dose     Make an OCC column for NONMEM IOV use
make_boot_datasets      Prepare a bootstrap tibble
make_xv_datasets        Write (bootstrap) cross validation datasets
new_nm                  Create a new (parent) nm object
nm_create_analysis_project
                        Create analysis project
nm_default_dir          Get a default directory
nm_default_dirs         Setup analysis subdirectories
nm_default_fields       Setup default nm object fields
nm_diff                 Compute diff between two NONMEM runs
nm_dir                  Get a directory name
nm_getsetters           Functions to access and modify fields of nm
                        objects
nm_getsetters_execution
                        Execution related functions to access and
                        modify fields of nm objects
nm_list_gather          Get all nm_list objects
nm_output_path          Find an output file associated with a run
nm_read_table           Fast read of NONMEM output table
nm_render               Create run reports
nm_summary              Generate a summary of NONMEM results
nm_tran                 Run NMTRAN step of a NONMEM job
nm_tran_command         Get/set nm_tran_command
nm_tree                 Make data.tree object
nmsave                  Save plots in results_dir
ofv                     Get Objective Function Value (OFV)
omega_matrix            Get OMEGA matrix from run
output_table            Reads all $TABLE outputs and merge with input
                        dataset
overwrite_behaviour     Overwrite behaviour of NMproject
parallel_execute        Generic execute command for parallelised runs
param_cov_diag          Plot relationship between a parameter and
                        covariate
parent_run              Get parent object of nm object
plot_iter               Plot iterations vs parameters/OBJ
ppc_data                PPC functions: process data from simulation and
                        plot
psn_style_scm           PsN style stepwise covariate method
read_derived_data       Read derived data
remove_parameter        Remove parameter from NONMEM control file
rename_parameter        Rename a parameter in NONMEM control stream
rmd_to_vignettes        Convert R markdown scripts to vignettes
rr                      Run record
run_all_scripts         Run all project scripts sequentially
run_dir_path            Get path to run_dir
run_nm                  Run NONMEM jobs
search_raw              Search for files matching raw text search
setup_code_completion   Set up code completion for NMproject
setup_nm_demo           Setup demo in current directory
sge_parallel_execute    Generic execute command for SGE grids
shiny_nm                Run monitor & summary app
show_ctl                Show an uneditable version of the control file
show_out                Show an uneditable version of the lst file
simple_field            Interface for getting and setting your own
                        simple fields in nm objects
stage                   Stage files in project staging area ready for
                        import
status                  Get status of NONMEM runs
status_table            Get status of multiple runs in form of table
subroutine              Subroutine
system_cmd              System/shell command wrapper
system_nm               System command for NONMEM execution
system_nm_intern        Convenience function for system_nm
temp_files              Remove temporary NONMEM files
test_relations          Generate tibble of covariate relations to test
update_parameters       Update initial estimates to final estimates
wait_finish             Wait for runs to finish
wait_for                Wait for statement to be TRUE
wipe_run                Wipe previous run files
write_derived_data      Write derived data file
