Brundle                 Brundle
dbaControl              Example DiffBind Object of Control Peaks
dbaExperiment           Example DiffBind Object of Experimental Peaks
jg.applyNormalisation   jg.applyNormalisation
jg.conditions           Example Sample Condition Matrix
jg.controlCountsTreated
                        Example ChIP-seq Count Matrix
jg.controlCountsUntreated
                        Example ChIP-seq Count Matrix
jg.controlPeaks         Example ChIP-seq Control Peakset
jg.controlPeakset       Example ChIP-seq Control Peakset
jg.controlPeaksetDeSeq
                        Example ChIP-seq Control Peakset
jg.controlResultsDeseq
                        Example ChIP-seq DeSEQ2 Control results
jg.convertPeakset       jg.convertPeakset
jg.correctDBASizeFactors
                        jg.correctDBASizeFactors
jg.countAlignedMReads   jg.countAlignedMReads
jg.dbaGetPeakset        dbaGetPeakset
jg.experimentPeakset    Example ChIP-seq Experiment Peakset
jg.experimentResultsDeseq
                        Example ChIP-seq DeSEQ2 results
jg.getControlCounts     jg.getControlCounts
jg.getCorrectionFactor
                        jg.getCorrectionFactor
jg.getDba               jg.getDba
jg.getNormalizationCoefficient
                        jg.getNormalizationCoefficient
jg.getSampleIds         jg.getSampleIds
jg.plotDeSeq            jg.plotDeSeq
jg.plotDeSeqCombined    jg.plotDeSeqCombined
jg.plotMA               jg.plotMA
jg.plotNormalization    jg.plotNormalization
jg.runDeSeq             jg.runDeSeq
