Package: BASiNET
Title: Classification of RNA Sequences using Complex Network Theory
Version: 0.0.4
Author: Eric Augusto Ito
Maintainer: Eric Augusto Ito <ericaugustoito@hotmail.com>
Description: It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. There are four data present in the 'BASiNET' package, "sequences", "sequences2", "sequences-predict" and "sequences2-predict" with 11, 10, 11 and 11 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples. The BASiNET was published on Nucleic Acids Research, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio; PEREIRA, Felipe; LOPES, Fabrício, 2018) <doi:10.1093/nar/gky462>.
Depends: R (>= 3.4.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: igraph, Biostrings, RWeka, randomForest, rmcfs, grDevices,
        graphics, stats, rJava
biocViews: Software, BiologicalQuestion, GenePrediction
RoxygenNote: 6.1.0
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-10-02 19:04:03 UTC; Eric
Repository: CRAN
Date/Publication: 2018-10-02 20:00:03 UTC
Built: R 4.0.2; ; 2020-07-17 12:05:56 UTC; unix
