Advanced Analytics and Testing Framework for Systematic Review
Search Strategies
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Documentation for package ‘searchAnalyzeR’ version 0.1.0
Help Pages
| analysis_env | Create a Temporary Analysis Environment |
| auto_detect_columns | Auto-detect Column Mappings |
| BenchmarkValidator | Benchmark Validation System |
| bootstrap_compare | Bootstrap Comparison of Search Strategies |
| cache_manage | Manage Search Results Cache |
| calc_ci | Calculate Confidence Intervals |
| calc_cosine | Calculate Cosine Similarity |
| calc_coverage | Calculate Coverage Metrics Across Databases |
| calc_efficiency | Calculate Search Efficiency Metrics |
| calc_jaccard | Calculate Jaccard Similarity |
| calc_precision_recall | Calculate Precision and Recall Metrics |
| calc_sample_size | Power Analysis for Search Strategy Evaluation |
| calc_search_stats | Calculate Search Result Statistics |
| calc_strategy_comparison | Calculate Strategy Comparison Metrics |
| calc_temporal_coverage | Calculate Temporal Coverage Metrics |
| calc_tes | Calculate Term Effectiveness Score |
| calc_text_sim | Calculate Text Similarity |
| check_deps | Utility Functions for searchAnalyzeR Package |
| chunk_process | Process Large Dataset in Chunks |
| clean_col_names | Clean Column Names |
| clean_text | Clean Text Fields |
| compare_strategies | Benchmark Testing Framework for Search Strategies |
| compare_terms | Compare Terms Across Strategies |
| complete_search_workflow | Complete Search and Analysis Workflow |
| create_analysis_template | Create Analysis Template Script |
| create_data_dictionary | Create Data Dictionary |
| create_data_package | Create Data Package for Sharing |
| create_package_manifest | Create Package Manifest |
| create_package_readme | Create Package README |
| create_prisma | Create PRISMA Flow Diagram with Proper Spacing and Text Enclosure |
| create_progress_bar | Create Progress Bar for Long Operations |
| create_strategy | Create Default Search Strategy Template |
| create_summary | Create Summary Statistics Table |
| cv_strategy | Cross-Validation Framework for Search Strategies |
| detect_doi_dupes | Detect DOI-based Duplicates |
| detect_dupes | Detect and Remove Duplicate Records |
| detect_exact_dupes | Detect Exact Duplicates |
| detect_fuzzy_dupes | Detect Fuzzy Duplicates |
| export_metrics | Export Analysis Metrics |
| export_metrics_csv | Export Metrics to CSV |
| export_metrics_json | Export Metrics to JSON |
| export_metrics_xlsx | Export Metrics to Excel |
| export_results | Export Utilities for Search Analysis Results |
| export_to_bibtex | Export to BibTeX Format |
| export_to_csv | Export to CSV Format |
| export_to_endnote | Export to EndNote Format |
| export_to_ris | Export to RIS Format |
| export_to_xlsx | Export to Excel Format with Multiple Sheets |
| export_validation | Export Validation Results |
| export_validation_csv | Export Validation Results to CSV |
| export_validation_json | Export Validation Results to JSON |
| export_validation_xlsx | Export Validation Results to Excel |
| extract_screening | Extract Screening Data Structure |
| find_top_terms | Find Top Performing Terms |
| format_numbers | Format Numbers for Display |
| gen_repro_seed | Generate Reproducible Random Seed |
| get_pkg_versions | Extract Package Version Information |
| is_empty | Check if Object is Empty |
| mem_cleanup | Clean up Search Analysis Objects to Free Memory |
| mem_monitor | Monitor Memory Usage During Function Execution |
| mem_usage | Get Current Memory Usage |
| merge_results | Merge Search Results from Multiple Sources |
| meta_analyze | Meta-Analysis of Benchmark Results |
| opt_df | Memory-Efficient Data Frame |
| plot_db_performance | Create Database Performance Comparison |
| plot_keyword_eff | Create Keyword Effectiveness Analysis Plot |
| plot_overview | Visualization Functions for Search Strategy Analysis |
| plot_pr_curve | Create Precision-Recall Curve |
| plot_sensitivity | Create Sensitivity Analysis Heatmap |
| plot_temporal | Create Temporal Coverage Plot |
| plot_term_effectiveness | Plot Term Effectiveness Results |
| print.term_comparison | Print Method for Term Comparison |
| print.term_effectiveness | Print Method for term_effectiveness Objects |
| PRISMAReporter | PRISMA-Compliant Report Generator |
| PubMedConnector | PubMed Database Connector |
| rename_columns | Rename Columns Based on Mapping |
| ReproducibilityManager | Search Reproducibility Manager |
| run_benchmarks | Benchmark Suite Execution |
| safe_divide | Safe Division Function |
| safe_list_to_df | Convert List to Data Frame Safely |
| SearchAnalyzer | Search Strategy Analytics Engine |
| search_multiple_databases | Search Multiple Databases |
| search_pubmed | Search PubMed and Retrieve Articles |
| simulate_search_execution | Simulate Search Strategy Execution |
| standardize_date | Standardize Date Formats |
| std_cochrane_results | Standardize Cochrane Results |
| std_embase_results | Standardize Embase Results |
| std_generic_results | Standardize Generic Results |
| std_pubmed_results | Standardize PubMed Results |
| std_scopus_results | Standardize Scopus Results |
| std_search_results | Standardize Search Results Format |
| std_wos_results | Standardize Web of Science Results |
| stream_file | Stream Process Large Files |
| term_effectiveness | Analyze Term Effectiveness in Search Results |
| validate_date_range | Validate Date Range |
| validate_strategy | Validate Search Strategy Object |