Chol_samp_fun           Cholesky-based FC sampling
EM_templateICA          EM Algorithms for Template ICA Models
IW_var                  Compute theoretical Inverse-Wishart variance of
                        covariance matrix elements
IW_var_cor              Compute theoretical Inverse-Wishart variance of
                        correlation matrix elements
UT2mat                  Transform upper-triangular elements to matrix
                        form
UpdateTheta_templateICA
                        Parameter Estimates in EM Algorithm for
                        Template ICA Model
activations             Activations of (spatial) template ICA
bdiag_m2                Bdiag m2
dim_reduce              PCA-based Dimension Reduction and Prewhitening
estimate.ESS            Estimation of effective sample size
estimate_nu             Universally estimate IW dof parameter nu based
                        on method of moments, so that no empirical
                        variance is under-estimated
estimate_nu_matrix      Estimate IW dof parameter nu based on method of
                        moments
estimate_template       Estimate template
estimate_template_FC    Estimate FC template
estimate_template_from_DR
                        Estimate template from DR
export_template         Export template
getInvCovAR             Compute inverse covariance matrix for AR
                        process (up to a constant scaling factor)
groupICA.cifti          Perform group ICA based on CIFTI data
lik                     Compute likelihood in SPDE model for ESS
                        estimation
make_mesh               Make INLA mesh from '"surf"' object
make_mesh_2D            Make 2D INLA mesh
norm_BOLD               Normalize BOLD data
orthonorm               Orthonormalizes a square, invertible matrix
plot.tICA.cifti         Plot template
plot.tICA.matrix        Plot template
plot.tICA.nifti         Plot template
plot.tICA_act.cifti     Plot activations
plot.template.cifti     Plot template
plot.template.gifti     Plot template
plot.template.matrix    Plot template
plot.template.nifti     Plot template
pw_estimate             Estimate residual autocorrelation for
                        prewhitening
resample_template       Resample CIFTI template
sqrt_XtX                Compute matrix square root of X'X
summary.tICA.cifti      Summarize a '"tICA.cifti"' object
summary.tICA.matrix     Summarize a '"tICA.matrix"' object
summary.tICA.nifti      Summarize a '"tICA.nifti"' object
summary.tICA_act.cifti
                        Summarize a '"tICA_act.cifti"' object
summary.tICA_act.matrix
                        Summarize a '"tICA_act.matrix"' object
summary.tICA_act.nifti
                        Summarize a '"tICA_act.nifti"' object
summary.template.cifti
                        Summarize a '"template.cifti"' object
summary.template.gifti
                        Summarize a '"template.gifti"' object
summary.template.matrix
                        Summarize a '"template.matrix"' object
summary.template.nifti
                        Summarize a '"template.nifti"' object
templateICA             Template ICA
var_sq_err              Compute the error between empirical and
                        theoretical variance of covariance matrix
                        elements
var_sq_err_constrained
                        Compute the overall error between empirical and
                        theoretical variance of CORRELATION matrix
                        elements
