Package: hdbayes
Title: Bayesian Analysis of Generalized Linear Models with Historical
        Data
Version: 0.1.1
Authors@R: c(person("Ethan M.", "Alt", email = "ethanalt@live.unc.edu", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6112-9030")), 
    person("Xinxin", "Chen", role = "aut"), 
    person("Luiz M.", "Carvalho", role = "aut"),
    person("Joseph G.", "Ibrahim", role = "aut"),
    person("Xiuya", "Chang", role = "ctb")
    )
Description: User-friendly functions for leveraging (multiple) historical data set(s) for generalized
    linear models. The package contains functions for sampling from the posterior distribution of a
    generalized linear model using the prior induced by the Bayesian hierarchical model, power prior 
    by Ibrahim and Chen (2000) <doi:10.1214/ss/1009212673>, normalized power prior by Duan et al. (2006) 
    <doi:10.1002/env.752>, normalized asymptotic power prior by Ibrahim et al. (2015) <doi:10.1002/sim.6728>, 
    commensurate prior by Hobbs et al. (2011) <doi:10.1111/j.1541-0420.2011.01564.x>, robust meta-analytic-predictive 
    prior by Schmidli et al. (2014) <doi:10.1111/biom.12242>, the latent exchangeability prior by Alt et al. (2023) 
    <doi:10.48550/arXiv.2303.05223>, and a normal (or half-normal) prior. Functions for computing the marginal 
    log-likelihood under each of the implemented priors are also included. The package compiles all 
    the 'CmdStan' models once during installation using the 'instantiate' package.
License: MIT + file LICENSE
URL: https://github.com/ethan-alt/hdbayes
BugReports: https://github.com/ethan-alt/hdbayes/issues
Encoding: UTF-8
RoxygenNote: 7.3.2
Depends: R (>= 4.2.0)
Imports: instantiate (>= 0.1.0), callr, fs, formula.tools, stats,
        posterior, enrichwith, mclust, bridgesampling, mvtnorm
Suggests: cmdstanr (>= 0.6.0), ggplot2, knitr, parallel, rmarkdown,
        tibble, dplyr
Additional_repositories: https://mc-stan.org/r-packages/
SystemRequirements: CmdStan
        (https://mc-stan.org/users/interfaces/cmdstan)
LazyData: true
Collate: 'E1684-data.R' 'E1690-data.R' 'E1694-data.R' 'E2696-data.R'
        'IBCSG_curr-data.R' 'IBCSG_hist-data.R' 'actg019-data.R'
        'actg036-data.R' 'data_checks.R' 'expfam_loglik.R'
        'get_stan_data.R' 'glm_bhm.R' 'glm_bhm_lognc.R'
        'glm_commensurate.R' 'mixture_loglik.R'
        'glm_commensurate_lognc.R' 'glm_leap.R' 'glm_leap_lognc.R'
        'glm_logml_commensurate.R' 'glm_logml_leap.R' 'glm_logml_map.R'
        'glm_logml_napp.R' 'glm_logml_npp.R' 'glm_logml_post.R'
        'glm_pp_lognc.R' 'glm_logml_pp.R' 'glm_napp.R'
        'glm_npp_lognc.R' 'glm_npp.R' 'glm_post.R' 'glm_pp.R'
        'glm_rmap.R' 'hdbayes-package.R' 'lm_npp.R' 'zzz.R'
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2024-08-22 16:22:52 UTC; xinxin
Author: Ethan M. Alt [aut, cre, cph] (<https://orcid.org/0000-0002-6112-9030>),
  Xinxin Chen [aut],
  Luiz M. Carvalho [aut],
  Joseph G. Ibrahim [aut],
  Xiuya Chang [ctb]
Maintainer: Ethan M. Alt <ethanalt@live.unc.edu>
Repository: CRAN
Date/Publication: 2024-08-22 23:50:02 UTC
Built: R 4.3.3; aarch64-apple-darwin20; 2024-08-23 02:24:07 UTC; unix
