LEVEL	NAME	ROLLUP	ASSIGNED	TAXID	READ_COUNT	READ_COUNT_RNR	READ_COUNT_RSNB	TOTAL_BP_MAPPED	TOTAL_BP_MISMATCH	LINEAR_LENGTH	LINEAR_DOC	PATHOGEN	SCORE	REL_ABUNDANCE	ABUNDANCE	LINEAR_COV	NOTE	RPKM	PRI_READ_COUNT	REB_READ_COUNT	REB_READ_COUNT_RNR	TOL_RS_READ_CNT	TOL_NS_READ_CNT	TOL_RS_RNR	TOL_NS_RNR	STR	SPE	GEN	FAM	ORD	CLA	PHY	SK	ROOT	STR_rnb	SPE_rnb	GEN_rnb	FAM_rnb	ORD_rnb	CLA_rnb	PHY_rnb	SK_rnb	ROOT_rnb	STR_rnr	SPE_rnr	GEN_rnr	FAM_rnr	ORD_rnr	CLA_rnr	PHY_rnr	SK_rnr	ROOT_rnr	STR_rni	SPE_rni	GEN_rni	FAM_rni	ORD_rni	CLA_rni	PHY_rni	SK_rni	ROOT_rni	SOURCE	LOCATION	HOST	DISEASE	DIFF_MEAN	DIFF_SD	MC_ERROR	HPD_2.5	HPD_97.5	P<0	P>0	SCORE_UNIQ	SCORE_TTEST
superkingdom	Bacteria	3353608		2	40400235	3353608.58	3321540.71	3022128056	19282946	407731941	7.4120		0.9854	0.9457	3353608	0.3081		0.7140	3354699	40400620.49204787	3353622.900179749	40392565	7670	3353319.4523359607	289.1297828407617	387462	32346816	1406863	6240860	5533	2275	2457	299	7670	383540.92	2632413.52	88493.45	216266.48	303.76	299.48	186.55	36.55	286.32	386684.00	2658058.00	89470.36	218268.49	307.18	304.89	189.25	37.28	289.13	384307.65	32059814.47	1392069.41	6183724.64	5465.51	2241.09	2423.64	292.89	7595.49												0.9853935277649652	
superkingdom	Archaea	192666		2157	192772	192666.86	191356.92	14422000	62424	1851959	7.7874		0.8987	0.0543	192666	0.9994		29.2895	192723	192810.44453337023	192684.2900186439	192772	0	192666.85525210085	0	192612	0	78	76	3	0	3	0	0	191302.56	0	36.52	16.79	0.73	0	0.32	0	0	192612.00	0	36.83	16.96	0.74	0	0.33	0	0	191302.56	0	77.33	75.24	2.97	0	2.91	0	0												0.8986621615225011	
superkingdom	Viruses	60		10239	742	60.08	27.28	54849	517	8099	6.7723		0.9798	0.0000	60	0.0142		0.0298	65	318.0634187621217	28.329229997134846	318	424	28.326666666666668	31.75539082095295	0	92	91	0	24	111	0	0	424	0	12.60	6.05	0	2.49	6.14	0	0	31.09	0	13.00	6.50	0	2.57	6.26	0	0	31.76	0	89.15	84.69	0	23.31	109.96	0	0	417.32												0.9798349821102459	
phylum	Firmicutes	2313966		1239	29732532	2313966.81	2294460.07	2224234212	13358637	143304019	15.5211		0.9853	0.6525	2313966	0.2380		1.0829	2314631	29738288.06017503	2314171.6462476915	29732450	82	2313958.6447348073	8.169175269175266	212734	28223023	1290579	3421	1712	529	452	82	0	211153.87	2001496.72	81253.85	299.45	149.06	58.95	48.18	8.01	0	212573.00	2018679.42	82143.80	302.60	151.38	59.67	48.77	8.17	0	211313.56	27983795.56	1277132.95	3380.44	1670.75	523.47	444.27	80.01	0												0.9852902526215994	
phylum	Proteobacteria	1023401		1224	10591903	1023401.79	1010971.46	792223716	5877428	259367995	3.0544		0.9854	0.2886	1023401	0.3770		0.4191	1023815	10586096.20525983	1023177.873502214	10584018	7885	1023083.6979317203	318.0879149260677	166540	4056732	116252	6236944	3817	1728	2005	215	7670	164283.03	623012.35	7225.40	215920.61	152.87	238.82	138.38	28.41	286.32	165928.00	631386.58	7312.24	217918.94	153.97	243.49	140.47	28.96	289.13	164885.15	4009695.95	114904.73	6179854.59	3790.77	1699.96	1979.37	211.16	7595.49												0.9853935277649652	
phylum	Euryarchaeota	192666		28890	192772	192666.86	191356.92	14422000	62424	1851959	7.7874		0.8987	0.0543	192666	0.9994		29.2895	192723	192809.8513891745	192684.5903709824	192772	0	192666.85525210085	0	192612	0	78	76	3	0	3	0	0	191302.56	0	36.52	16.79	0.73	0	0.32	0	0	192612.00	0	36.83	16.96	0.74	0	0.33	0	0	191302.56	0	77.33	75.24	2.97	0	2.91	0	0												0.8986621615225011	
phylum	Actinobacteria	8045		201174	67579	8045.68	7957.55	5055151	42511	4496996	1.1241		0.9232	0.0023	8045	0.1790		0.0902	8046	67592.26934943366	8046.422972775301	67579	0	8045.682362082362	0	5	67061	0	495	0	18	0	0	0	4.96	7904.46	0	46.42	0	1.71	0	0	0	5.00	7992.00	0	46.95	0	1.73	0	0	0	4.96	66322.96	0	489.61	0	17.67	0	0	0												0.9231576304576308	
phylum	Deinococcus-Thermus	7166		1297	7182	7166.30	7094.57	537211	3963	486177	1.1050		0.9542	0.0020	7166	0.1588		0.6596	7173	7181.409815607417	7166.809649123387	7180	2	7166.15	0.15	7165	0	15	0	0	0	0	2	0	7088.50	0	6.07	0	0	0	0	0.13	0	7160.00	0	6.15	0	0	0	0	0.15	0	7093.43	0	14.83	0	0	0	0	1.72	0												0.9541545988001946	
phylum	Bacteroidetes	1028		976	1039	1028.00	1020.52	77766	407	76754	1.0132		0.9103	0.0003	1028	0.0149		0.0561	1034	1039.2040109214631	1028.0946281195402	1039	0	1028.0	0	1018	0	17	0	4	0	0	0	0	1010.56	0	8.13	0	1.83	0	0	0	0	1018.00	0	8.17	0	1.83	0	0	0	0	1010.56	0	16.91	0	3.99	0	0	0	0												0.9103429989861845	
class	Bacilli	2251596		91061	29668829	2251596.10	2232465.04	2219468617	13338166	140024425	15.8506		0.9853	0.6349	2251596	0.2396		1.0855	2252220	29675950.23155705	2251871.2419662643	29668326	503	2251543.5960513484	52.50316925072208	151073	28223023	1288627	3397	1677	529	433	70	0	149903.20	2001496.72	80564.05	297.42	144.70	58.95	44.89	6.90	0	150912.00	2018679.42	81444.95	300.57	146.98	59.67	45.46	7.04	0	150062.89	27983795.56	1275204.71	3356.48	1636.01	523.47	425.35	68.21	0												0.9852902526215994	
class	Alphaproteobacteria	613277		28211	1361729	613277.54	605119.19	101827740	1113270	10700607	9.5161		0.9770	0.1729	613277	0.6619		10.6871	613579	1361741.8535053146	613305.0121029437	1361392	337	613215.7765915752	61.76675117089877	164788	1193473	547	1499	0	1085	226	111	0	162549.85	441946.94	107.84	308.27	0	206.30	44.43	15.94	0	164176.00	448405.00	109.69	314.34	0	210.75	45.37	16.40	0	163151.96	1176308.91	538.32	1470.47	0	1060.91	221.20	107.84	0												0.9769665816652634	
class	Gammaproteobacteria	401010		1236	9135400	401010.09	396717.30	683313409	4699043	242114362	2.8223		0.9802	0.1131	401010	0.4436		0.2070	401119	9128302.208467362	400682.8844687359	9125957	9443	400624.5853493963	385.5027696577677	1730	2791299	93117	6235445	3794	572	1669	104	7670	1711.37	173740.16	5473.09	215612.34	152.05	28.29	82.81	12.47	286.32	1730.00	175572.58	5535.79	217604.60	153.15	28.46	83.81	12.56	289.13	1711.37	2762337.24	92073.81	6178384.12	3767.77	568.80	1649.61	103.32	7595.49												0.9802485781565422	
class	Methanobacteria	192666		183925	192772	192666.86	191356.60	14422000	62424	1851959	7.7874		0.8987	0.0543	192666	0.9994		29.2895	192723	192818.53820087525	192694.56551512275	192769	3	192666.5285714286	0.32668067226890757	192612	0	78	76	3	0	3	0	0	191302.56	0	36.52	16.79	0.73	0	0.32	0	0	192612.00	0	36.83	16.96	0.74	0	0.33	0	0	191302.56	0	77.33	75.24	2.97	0	2.91	0	0												0.8986621615225011	
class	Clostridia	62370		186801	63703	62370.71	61946.85	4765595	20471	3279594	1.4531		0.9595	0.0176	62370	0.1859		0.9962	62411	63688.36257036209	62375.350750943435	63672	31	62366.275174825176	4.439514652014651	61661	0	1952	24	35	0	19	12	0	61250.67	0	689.80	2.03	4.36	0	3.29	1.11	0	61661.00	0	698.85	2.03	4.40	0	3.31	1.13	0	61250.67	0	1928.24	23.96	34.73	0	18.92	11.80	0												0.959532543102782	
class	Actinobacteria	8045		1760	67579	8045.68	7957.55	5055151	42511	4496996	1.1241		0.9232	0.0023	8045	0.1790		0.0902	8046	67596.36659980053	8046.853174392311	67579	0	8045.682362082362	0	5	67061	0	495	0	18	0	0	0	4.96	7904.46	0	46.42	0	1.71	0	0	0	5.00	7992.00	0	46.95	0	1.73	0	0	0	4.96	66322.96	0	489.61	0	17.67	0	0	0												0.9231576304576308	
class	Deinococci	7166		188787	7182	7166.30	7094.57	537211	3963	486177	1.1050		0.9542	0.0020	7166	0.1588		0.6596	7173	7181.845132164842	7167.19282225638	7180	2	7166.15	0.15	7165	0	15	0	0	0	0	2	0	7088.50	0	6.07	0	0	0	0	0.13	0	7160.00	0	6.15	0	0	0	0	0.15	0	7093.43	0	14.83	0	0	0	0	1.72	0												0.9541545988001946	
class	Betaproteobacteria	4724		28216	47663	4724.57	4656.30	3562660	32490	3290006	1.0829		0.9796	0.0013	4724	0.0823		0.0333	4728	47565.22027435024	4713.9648485403095	47553	110	4713.27896948253	11.292063492063493	21	25642	21819	0	0	71	110	0	0	20.83	3025.02	1606.22	0	0	4.23	11.13	0	0	21.00	3060.00	1628.00	0	0	4.28	11.29	0	0	20.83	25337.28	21532.01	0	0	70.25	108.56	0	0												0.979647210798372	
class	Epsilonproteobacteria	4389		29547	47111	4389.58	4340.30	3519907	32625	3263020	1.0787		0.9854	0.0012	4389	0.0380		0.0144	4389	47123.106688219756	4390.222126556906	47111	0	4389.583351870977	0	1	46318	769	0	23	0	0	0	0	0.99	4300.23	38.26	0	0.82	0	0	0	0	1.00	4349.00	38.76	0	0.82	0	0	0	0	0.99	45712.52	760.59	0	23.00	0	0	0	0												0.9853935277649652	
class	Bacteroidia	1028		200643	1039	1028.00	1020.52	77766	407	76754	1.0132		0.9103	0.0003	1028	0.0149		0.0561	1034	1039.2670045012912	1028.1495951493562	1039	0	1028.0	0	1018	0	17	0	4	0	0	0	0	1010.56	0	8.13	0	1.83	0	0	0	0	1018.00	0	8.17	0	1.83	0	0	0	0	1010.56	0	16.91	0	3.99	0	0	0	0												0.9103429989861845	
order	Bacillales	1859093		1385	28219758	1859093.61	1843664.86	2111099463	12596214	124739503	16.9241		0.9853	0.5242	1859093	0.2807		1.1787	1859324	28228030.118114203	1859468.0524550797	28219093	665	1859027.9369435369	65.6706539905138	128104	26849583	1236958	3249	1199	333	310	22	0	127089.49	1642142.42	74037.57	288.14	107.24	27.51	34.72	2.52	0	127943.00	1655851.50	74833.13	291.06	109.25	27.90	35.18	2.59	0	127249.19	26623503.83	1224260.00	3213.68	1161.69	329.60	303.89	21.44	0												0.9852902526215994	
order	Rhodobacterales	613277		204455	1361729	613277.54	604912.89	101827740	1113270	10700607	9.5161		0.9770	0.1729	613277	0.6619		10.6871	613579	1360737.8155591881	613150.156692766	1360307	1422	613005.0308356645	272.51250708165475	164788	1193473	547	1499	0	1085	226	111	0	162549.85	441946.94	107.84	308.27	0	206.30	44.43	15.94	0	164176.00	448405.00	109.69	314.34	0	210.75	45.37	16.40	0	163151.96	1176308.91	538.32	1470.47	0	1060.91	221.20	107.84	0												0.9769665816652634	
order	Lactobacillales	392502		186826	1449071	392502.49	388741.24	108369154	741952	15284922	7.0899		0.9754	0.1107	392502	0.1092		0.7897	392896	1449162.81130058	392548.89978080924	1448704	367	392455.9878000928	46.503822978893226	22969	1373440	51669	148	478	196	123	48	0	22813.71	359354.30	6526.48	9.28	37.46	31.44	10.17	4.37	0	22969.00	362827.92	6611.82	9.51	37.74	31.77	10.28	4.45	0	22813.71	1360291.73	50944.71	142.80	474.32	193.87	121.45	46.77	0												0.9754151134588323	
order	Enterobacterales	311412		91347	7868759	311412.36	308276.46	588572908	3777795	178284697	3.3013		0.9802	0.0878	311412	0.4993		0.2457	311474	7862577.326458651	311148.22184322943	7860088	8671	311074.5765022184	337.78403584458647	667	1556275	64720	6234632	3794	226	671	104	7670	658.80	88432.84	3469.62	215563.15	152.05	9.64	26.22	12.47	286.32	667.00	89193.50	3506.25	217554.68	153.15	9.66	26.43	12.56	289.13	658.80	1542639.20	64030.13	6177582.08	3767.77	225.65	665.72	103.32	7595.49												0.9802485781565422	
order	Methanobacteriales	192666		2158	192772	192666.86	191356.60	14422000	62424	1851959	7.7874		0.8987	0.0543	192666	0.9994		29.2895	192723	192830.05083964806	192712.14140278756	192769	3	192666.5285714286	0.32668067226890757	192612	0	78	76	3	0	3	0	0	191302.56	0	36.52	16.79	0.73	0	0.32	0	0	192612.00	0	36.83	16.96	0.74	0	0.33	0	0	191302.56	0	77.33	75.24	2.97	0	2.91	0	0												0.8986621615225011	
order	Pseudomonadales	89092		72274	1265481	89092.70	87916.86	94653805	919861	63744806	1.4849		0.9792	0.0251	89092	0.3651		0.1438	89124	1264541.3593393313	89037.96663203325	1264141	1340	89016.89233060642	75.80713832651844	871	1234124	28397	749	0	342	998	0	0	863.23	85011.30	2003.47	38.86	0	18.30	56.59	0	0	871.00	86077.00	2029.55	39.35	0	18.43	57.38	0	0	863.23	1218816.04	28043.68	739.57	0	339.51	983.89	0	0												0.9792146023314743	
order	Clostridiales	62370		186802	63703	62370.71	61946.85	4765595	20471	3279594	1.4531		0.9595	0.0176	62370	0.1859		0.9962	62411	63692.165218795926	62381.04007671617	63672	31	62366.275174825176	4.439514652014651	61661	0	1952	24	35	0	19	12	0	61250.67	0	689.80	2.03	4.36	0	3.29	1.11	0	61661.00	0	698.85	2.03	4.40	0	3.31	1.13	0	61250.67	0	1928.24	23.96	34.73	0	18.92	11.80	0												0.959532543102782	
order	Propionibacteriales	8045		85009	67579	8045.68	7955.84	5055151	42511	4496996	1.1241		0.9232	0.0023	8045	0.1790		0.0902	8046	67582.39688319938	8045.8518777033005	67561	18	8043.9475135975135	1.7348484848484849	5	67061	0	495	0	18	0	0	0	4.96	7904.46	0	46.42	0	1.71	0	0	0	5.00	7992.00	0	46.95	0	1.73	0	0	0	4.96	66322.96	0	489.61	0	17.67	0	0	0												0.9231576304576308	
order	Deinococcales	7166		118964	7182	7166.30	7094.57	537211	3963	486177	1.1050		0.9542	0.0020	7166	0.1588		0.6596	7173	7182.273939423211	7167.846549960528	7180	2	7166.15	0.15	7165	0	15	0	0	0	0	2	0	7088.50	0	6.07	0	0	0	0	0.13	0	7160.00	0	6.15	0	0	0	0	0.15	0	7093.43	0	14.83	0	0	0	0	1.72	0												0.9541545988001946	
order	Neisseriales	4724		206351	47663	4724.57	4652.06	3562660	32490	3290006	1.0829		0.9796	0.0013	4724	0.0823		0.0333	4728	47497.03777043077	4710.114832059631	47482	181	4709.0	15.571032974593347	21	25642	21819	0	0	71	110	0	0	20.83	3025.02	1606.22	0	0	4.23	11.13	0	0	21.00	3060.00	1628.00	0	0	4.28	11.29	0	0	20.83	25337.28	21532.01	0	0	70.25	108.56	0	0												0.979647210798372	
order	Campylobacterales	4389		213849	47111	4389.58	4340.30	3519907	32625	3263020	1.0787		0.9854	0.0012	4389	0.0380		0.0144	4389	47125.92027300375	4390.622563646108	47111	0	4389.583351870977	0	1	46318	769	0	23	0	0	0	0	0.99	4300.23	38.26	0	0.82	0	0	0	0	1.00	4349.00	38.76	0	0.82	0	0	0	0	0.99	45712.52	760.59	0	23.00	0	0	0	0												0.9853935277649652	
order	Bacteroidales	1028		171549	1039	1028.00	1020.52	77766	407	76754	1.0132		0.9103	0.0003	1028	0.0149		0.0561	1034	1039.32905613659	1028.2433738282652	1039	0	1028.0	0	1018	0	17	0	4	0	0	0	0	1010.56	0	8.13	0	1.83	0	0	0	0	1018.00	0	8.17	0	1.83	0	0	0	0	1010.56	0	16.91	0	3.99	0	0	0	0												0.9103429989861845	
order	Xanthomonadales	505		135614	1160	505.03	495.69	86696	1387	84859	1.0216		0.9670	0.0001	505	0.0060		0.0100	521	1156.3661105812303	504.7756570459429	1156	4	504.6561822336589	0.3719298245614035	192	900	0	64	0	4	0	0	0	189.35	296.01	0	10.33	0	0.35	0	0	0	192.00	302.08	0	10.57	0	0.37	0	0	0	189.35	882.00	0	62.47	0	3.64	0	0	0												0.9669802970259384	
order	Picornavirales	31		464095	240	31.50	12.60	17828	327	1114	16.0036		0.8090	0.0000	31	0.0143		0.1143	34	92.02913682826399	13.003077684598681	92	148	12.999999999999996	18.49944444444445	0	92	0	0	0	10	0	0	138	0	12.60	0	0	0	0.48	0	0	17.54	0	13.00	0	0	0	0.48	0	0	18.02	0	89.15	0	0	0	9.97	0	0	134.23												0.8090026523832771	
family	Staphylococcaceae	1842949		90964	28081659	1842949.89	1827616.09	2100777786	12507371	115116472	18.2492		0.9822	0.5197	1842949	0.7247		3.2685	1843177	28093174.980870314	1843412.8240062008	28080174	1485	1842805.3760551137	144.5099180403324	125684	26792734	1158507	3249	875	320	268	22	0	124685.37	1635297.55	67345.03	288.14	96.10	26.91	17.24	2.52	0	125523.00	1648942.50	68048.82	291.06	97.09	27.27	17.57	2.59	0	124845.07	26567196.67	1146883.92	3213.68	865.35	317.21	262.20	21.44	0												0.9821782504356024	
family	Rhodobacteraceae	613277		31989	1361729	613277.54	604912.89	101827740	1113270	10700607	9.5161		0.9770	0.1729	613277	0.6619		10.6871	613579	1360936.8153738205	613207.0970195521	1360307	1422	613005.0308356645	272.51250708165475	164788	1193473	547	1499	0	1085	226	111	0	162549.85	441946.94	107.84	308.27	0	206.30	44.43	15.94	0	164176.00	448405.00	109.69	314.34	0	210.75	45.37	16.40	0	163151.96	1176308.91	538.32	1470.47	0	1060.91	221.20	107.84	0												0.9769665816652634	
family	Streptococcaceae	392143		1300	1448527	392143.78	388351.08	108328486	741748	15246547	7.1051		0.9736	0.1106	392143	0.1126		0.8160	392499	1448392.2880839533	392192.1237845638	1447722	805	392062.88724084286	80.8924209846122	22673	1373254	51647	148	445	189	123	48	0	22519.95	359300.79	6521.06	9.28	34.88	30.74	10.17	4.37	0	22673.00	362774.00	6606.37	9.51	35.10	31.06	10.28	4.45	0	22519.95	1360107.09	50922.79	142.80	441.93	187.05	121.45	46.77	0												0.9736371645557661	
family	Enterobacteriaceae	310770		543	7868085	310770.83	307494.12	588522469	3777300	178234852	3.3019		0.9751	0.0876	310770	0.5066		0.2489	310818	7859277.1222402	310385.7118394653	7855640	12445	310283.4324356073	487.39275887548575	36	1556272	64703	6234629	3777	223	671	104	7670	35.41	88431.38	3464.42	215562.90	149.32	8.87	26.22	12.47	286.32	36.00	89192.00	3501.00	217554.43	150.39	8.88	26.43	12.56	289.13	35.41	1542636.27	64013.31	6177579.17	3750.88	222.68	665.72	103.32	7595.49												0.9750618358509828	
family	Methanobacteriaceae	192666		2159	192772	192666.86	191355.87	14422000	62424	1851959	7.7874		0.8987	0.0543	192666	0.9994		29.2895	192723	192855.24969903845	192729.30130525318	192766	6	192665.79246031746	1.0627917833800187	192612	0	78	76	3	0	3	0	0	191302.56	0	36.52	16.79	0.73	0	0.32	0	0	192612.00	0	36.83	16.96	0.74	0	0.33	0	0	191302.56	0	77.33	75.24	2.97	0	2.91	0	0												0.8986621615225011	
family	Pseudomonadaceae	73983		135621	1114760	73983.77	72998.90	83377223	808889	54097815	1.5412		0.9792	0.0209	73983	0.4674		0.1801	74016	1114021.5477385924	73937.76977762087	1113506	1254	73913.40554071503	70.36800433959033	39	1100503	12254	710	0	268	986	0	0	38.39	72256.49	667.43	36.60	0	13.55	55.93	0	0	39.00	73161.00	676.33	37.07	0	13.65	56.71	0	0	38.39	1086842.21	12091.85	700.75	0	265.87	972.05	0	0												0.9792146023314743	
family	Clostridiaceae	62370		31979	63703	62370.71	61942.49	4765595	20471	3279594	1.4531		0.9595	0.0176	62370	0.1859		0.9962	62411	63666.4636144222	62382.4362025617	63637	66	62361.87972027972	8.834969197469196	61661	0	1952	24	35	0	19	12	0	61250.67	0	689.80	2.03	4.36	0	3.29	1.11	0	61661.00	0	698.85	2.03	4.40	0	3.31	1.13	0	61250.67	0	1928.24	23.96	34.73	0	18.92	11.80	0												0.959532543102782	
family	Moraxellaceae	15108		468	150721	15108.93	14917.96	11276582	110972	9646991	1.1689		0.9704	0.0043	15108	0.1639		0.0723	15108	150704.7432556294	15108.46538514839	150635	86	15103.486789891398	5.4391339869281055	832	133621	16143	39	0	74	12	0	0	824.84	12754.81	1336.05	2.26	0	4.75	0.66	0	0	832.00	12916.00	1353.21	2.27	0	4.77	0.67	0	0	824.84	131973.83	15951.83	38.83	0	73.64	11.84	0	0												0.9703808789336213	
family	Bacillaceae	12896		186817	87945	12896.16	12725.27	6571068	63311	6025074	1.0906		0.9753	0.0036	12896	0.0342		0.0206	12896	87644.5602161925	12871.338571023378	87604	341	12867.097161752	29.0640308193174	2373	10551	74680	0	298	1	42	0	0	2357.48	3833.48	6534.31	0	10.48	0.12	17.48	0	0	2373.00	3870.00	6624.10	0	11.32	0.12	17.62	0	0	2357.48	10444.04	73649.99	0	275.89	1.00	41.69	0	0												0.9753277494618586	
family	Propionibacteriaceae	8045		31957	67579	8045.68	7955.84	5055151	42511	4496996	1.1241		0.9232	0.0023	8045	0.1790		0.0902	8046	67592.28040690131	8046.599057542022	67561	18	8043.9475135975135	1.7348484848484849	5	67061	0	495	0	18	0	0	0	4.96	7904.46	0	46.42	0	1.71	0	0	0	5.00	7992.00	0	46.95	0	1.73	0	0	0	4.96	66322.96	0	489.61	0	17.67	0	0	0												0.9231576304576308	
family	Deinococcaceae	7166		183710	7182	7166.30	7094.57	537211	3963	486177	1.1050		0.9542	0.0020	7166	0.1588		0.6596	7173	7183.3243042813365	7168.512193637615	7180	2	7166.15	0.15	7165	0	15	0	0	0	0	2	0	7088.50	0	6.07	0	0	0	0	0.13	0	7160.00	0	6.15	0	0	0	0	0.15	0	7093.43	0	14.83	0	0	0	0	1.72	0												0.9541545988001946	
family	Neisseriaceae	4724		481	47663	4724.57	4652.06	3562660	32490	3290006	1.0829		0.9796	0.0013	4724	0.0823		0.0333	4728	47503.983929789196	4710.552237929646	47482	181	4709.0	15.571032974593347	21	25642	21819	0	0	71	110	0	0	20.83	3025.02	1606.22	0	0	4.23	11.13	0	0	21.00	3060.00	1628.00	0	0	4.28	11.29	0	0	20.83	25337.28	21532.01	0	0	70.25	108.56	0	0												0.979647210798372	
family	Helicobacteraceae	4389		72293	47111	4389.58	4339.48	3519907	32625	3263020	1.0787		0.9854	0.0012	4389	0.0380		0.0144	4389	47109.80150974924	4390.208600454259	47088	23	4388.7619232995485	0.8214285714285712	1	46318	769	0	23	0	0	0	0	0.99	4300.23	38.26	0	0.82	0	0	0	0	1.00	4349.00	38.76	0	0.82	0	0	0	0	0.99	45712.52	760.59	0	23.00	0	0	0	0												0.9853935277649652	
family	Listeriaceae	3247		186820	50154	3247.56	3216.25	3750609	25532	3597957	1.0424		0.9853	0.0009	3247	0.0329		0.0084	3251	50139.20345868572	3247.286014952174	50116	38	3246.2159577134003	1.3444740884469233	47	46298	3771	0	26	12	0	0	0	46.64	3011.39	158.22	0	0.66	0.47	0	0	0	47.00	3039.00	160.22	0	0.84	0.51	0	0	0	46.64	45863.12	3726.09	0	20.45	11.39	0	0	0												0.9852902526215994	
family	Bacteroidaceae	1028		815	1039	1028.00	1018.69	77766	407	76754	1.0132		0.9103	0.0003	1028	0.0149		0.0561	1034	1035.4791998511396	1026.5049242207415	1035	4	1026.1666666666667	1.8333333333333333	1018	0	17	0	4	0	0	0	0	1010.56	0	8.13	0	1.83	0	0	0	0	1018.00	0	8.17	0	1.83	0	0	0	0	1010.56	0	16.91	0	3.99	0	0	0	0												0.9103429989861845	
family	Yersiniaceae	641		1903411	674	641.54	630.29	50439	495	49845	1.0119		0.9802	0.0002	641	0.0095		0.0345	656	654.3027987465173	638.2075266366079	654	20	637.9972222222223	3.538121357985535	631	3	17	3	17	3	0	0	0	623.39	1.47	5.19	0.24	2.73	0.77	0	0	0	631.00	1.50	5.25	0.25	2.76	0.78	0	0	0	623.39	2.93	16.83	2.91	16.89	2.97	0	0	0												0.9802485781565422	
family	Xanthomonadaceae	505		32033	1160	505.03	495.69	86696	1387	84859	1.0216		0.9670	0.0001	505	0.0060		0.0100	521	1156.5352222491956	504.82253315051884	1156	4	504.6561822336589	0.3719298245614035	192	900	0	64	0	4	0	0	0	189.35	296.01	0	10.33	0	0.35	0	0	0	192.00	302.08	0	10.57	0	0.37	0	0	0	189.35	882.00	0	62.47	0	3.64	0	0	0												0.9669802970259384	
family	Lactobacillaceae	285		33958	302	285.39	283.12	22592	106	22405	1.0083		0.9754	0.0001	285	0.0118		0.0424	293	301.13936150260196	285.34224127606853	301	1	285.2482142857143	0.14285714285714285	280	0	21	0	0	1	0	0	0	277.89	0	5.22	0	0	0.14	0	0	0	280.00	0	5.25	0	0	0.14	0	0	0	277.89	0	20.92	0	0	1.00	0	0	0												0.9754151134588323	
family	Enterococcaceae	73		81852	242	73.32	69.58	18076	98	15970	1.1319		0.9241	0.0000	73	0.0058		0.0075	104	203.09398799012692	70.13977937626541	203	39	70.11666666666669	3.204223148949316	16	186	1	0	33	6	0	0	0	15.87	53.52	0.20	0	2.58	0.55	0	0	0	16.00	53.92	0.20	0	2.63	0.57	0	0	0	15.87	184.64	1.00	0	32.39	5.81	0	0	0												0.9241371304792102	
family	Picornaviridae	31		12058	240	31.50	12.60	17828	327	1114	16.0036		0.8090	0.0000	31	0.0143		0.1143	34	92.04259554232353	13.004285218323504	92	148	12.999999999999996	18.49944444444445	0	92	0	0	0	10	0	0	138	0	12.60	0	0	0	0.48	0	0	17.54	0	13.00	0	0	0	0.48	0	0	18.02	0	89.15	0	0	0	9.97	0	0	134.23												0.8090026523832771	
family	Flaviviridae	14		11050	193	14.51	5.58	13985	63	2149	6.5077		0.9798	0.0000	14	0.0083		0.0157	16	90.04166955227302	6.001977793072389	90	103	6.000000000000001	8.511904761904763	0	0	90	0	18	74	0	0	11	0	0	5.58	0	1.84	4.39	0	0	2.13	0	0	6.00	0	1.87	4.50	0	0	2.15	0	0	83.76	0	17.69	73.24	0	0	10.93												0.9798349821102459	
genus	Staphylococcus	1842949		1279	28081659	1842949.89	1827327.95	2100777786	12507371	115116472	18.2492		0.9822	0.5197	1842949	0.7247		3.2685	1843177	33195864.635629263	1964053.7629086436	28076925	4734	1842514.3176953176	435.56827783647634	125684	26792734	1158507	3249	875	320	268	22	0	124685.37	1635297.55	67345.03	288.14	96.10	26.91	17.24	2.52	0	125523.00	1648942.50	68048.82	291.06	97.09	27.27	17.57	2.59	0	124845.07	26567196.67	1146883.92	3213.68	865.35	317.21	262.20	21.44	0												0.9821782504356024	
genus	Rhodobacter	613277		1060	1361729	613277.54	604604.62	101827740	1113270	10700607	9.5161		0.9770	0.1729	613277	0.6619		10.6871	613579	1606543.680755999	653106.1603677168	1358808	2921	612690.688095235	586.85524751116	164788	1193473	547	1499	0	1085	226	111	0	162549.85	441946.94	107.84	308.27	0	206.30	44.43	15.94	0	164176.00	448405.00	109.69	314.34	0	210.75	45.37	16.40	0	163151.96	1176308.91	538.32	1470.47	0	1060.91	221.20	107.84	0												0.9769665816652634	
genus	Streptococcus	392143		1301	1448527	392143.78	388341.79	108328486	741748	15246547	7.1051		0.9736	0.1106	392143	0.1126		0.8160	392499	1711493.3545627377	417914.746928656	1447574	953	392053.3741661534	90.40549567410513	22673	1373254	51647	148	445	189	123	48	0	22519.95	359300.79	6521.06	9.28	34.88	30.74	10.17	4.37	0	22673.00	362774.00	6606.37	9.51	35.10	31.06	10.28	4.45	0	22519.95	1360107.09	50922.79	142.80	441.93	187.05	121.45	46.77	0												0.9736371645557661	
genus	Escherichia	281746		561	7045135	281746.04	91914.49	526968291	3360634	157606392	3.3436		0.9751	0.0794	281746	0.5083		0.2560	283648	1916526.2797015228	98827.6458521921	1620990	5424145	92712.00000000003	189034.0401578518	21	1556269	64700	5412659	3408	212	608	104	7154	20.61	88430.44	3463.43	186865.43	137.23	8.50	24.18	12.47	268.40	21.00	89191.00	3500.00	188579.32	138.22	8.51	24.39	12.56	271.04	20.61	1542633.47	64010.33	5363384.17	3384.53	211.68	602.92	103.32	7084.39												0.9750618358509828	
genus	Methanobrevibacter	192666		2172	192772	192666.86	191339.08	14422000	62424	1851959	7.7874		0.8987	0.0543	192666	0.9994		29.2895	192723	227820.92970079175	205356.70328010013	192690	82	192648.83333333334	18.021918767507	192612	0	78	76	3	0	3	0	0	191302.56	0	36.52	16.79	0.73	0	0.32	0	0	192612.00	0	36.83	16.96	0.74	0	0.33	0	0	191302.56	0	77.33	75.24	2.97	0	2.91	0	0												0.8986621615225011	
genus	Pseudomonas	73983		286	1114760	73983.77	72962.30	83377223	808889	54097815	1.5412		0.9792	0.0209	73983	0.4674		0.1801	74016	1315679.1701039092	78749.50422254481	1112796	1964	73876.33260434112	107.44094071350193	39	1100503	12254	710	0	268	986	0	0	38.39	72256.49	667.43	36.60	0	13.55	55.93	0	0	39.00	73161.00	676.33	37.07	0	13.65	56.71	0	0	38.39	1086842.21	12091.85	700.75	0	265.87	972.05	0	0												0.9792146023314743	
genus	Clostridium	62370		1485	63703	62370.71	61940.46	4765595	20471	3279594	1.4531		0.9595	0.0176	62370	0.1859		0.9962	62411	75210.81945641428	66473.34941750603	63613	90	62359.85	10.864689477189476	61661	0	1952	24	35	0	19	12	0	61250.67	0	689.80	2.03	4.36	0	3.29	1.11	0	61661.00	0	698.85	2.03	4.40	0	3.31	1.13	0	61250.67	0	1928.24	23.96	34.73	0	18.92	11.80	0												0.959532543102782	
genus	Shigella	29024		620	822950	29024.79	16.72	61554178	416666	20628460	2.9839		0.9598	0.0082	29024	0.4941		0.1959	27170	24.828686095368866	18.12138643851136	21	822929	17.0	29007.785036630983	15	3	3	821970	369	11	63	0	516	14.80	0.93	0.99	28697.47	12.08	0.37	2.04	0	17.92	15.00	1.00	1.00	28975.11	12.17	0.37	2.04	0	18.09	14.80	2.80	2.97	814195.00	366.35	11.00	62.80	0	511.11												0.9598089116884359	
genus	Acinetobacter	15108		469	150721	15108.93	14915.70	11276582	110972	9646991	1.1689		0.9704	0.0043	15108	0.1639		0.0723	15108	178052.4195818176	16097.348763273963	150596	125	15101.213690476194	7.712233402132783	832	133621	16143	39	0	74	12	0	0	824.84	12754.81	1336.05	2.26	0	4.75	0.66	0	0	832.00	12916.00	1353.21	2.27	0	4.77	0.67	0	0	824.84	131973.83	15951.83	38.83	0	73.64	11.84	0	0												0.9703808789336213	
genus	Bacillus	12896		1386	87945	12896.16	12725.27	6571068	63311	6025074	1.0906		0.9753	0.0036	12896	0.0342		0.0206	12896	103575.81984279497	13715.86117705769	87604	341	12867.097161752	29.0640308193174	2373	10551	74680	0	298	1	42	0	0	2357.48	3833.48	6534.31	0	10.48	0.12	17.48	0	0	2373.00	3870.00	6624.10	0	11.32	0.12	17.62	0	0	2357.48	10444.04	73649.99	0	275.89	1.00	41.69	0	0												0.9753277494618586	
genus	Propionibacterium	8045		1743	67579	8045.68	7909.42	5055151	42511	4496996	1.1241		0.9232	0.0023	8045	0.1790		0.0902	8046	79293.3648415242	8524.513373457374	67066	513	7997.0	48.682362082362054	5	67061	0	495	0	18	0	0	0	4.96	7904.46	0	46.42	0	1.71	0	0	0	5.00	7992.00	0	46.95	0	1.73	0	0	0	4.96	66322.96	0	489.61	0	17.67	0	0	0												0.9231576304576308	
genus	Deinococcus	7166		1298	7182	7166.30	7094.57	537211	3963	486177	1.1050		0.9542	0.0020	7166	0.1588		0.6596	7173	8489.046007845165	7638.857260372834	7180	2	7166.15	0.15	7165	0	15	0	0	0	0	2	0	7088.50	0	6.07	0	0	0	0	0.13	0	7160.00	0	6.15	0	0	0	0	0.15	0	7093.43	0	14.83	0	0	0	0	1.72	0												0.9541545988001946	
genus	Neisseria	4724		482	47663	4724.57	4652.06	3562660	32490	3290006	1.0829		0.9796	0.0013	4724	0.0823		0.0333	4728	56138.8415800145	5019.6240434676465	47482	181	4709.0	15.571032974593347	21	25642	21819	0	0	71	110	0	0	20.83	3025.02	1606.22	0	0	4.23	11.13	0	0	21.00	3060.00	1628.00	0	0	4.28	11.29	0	0	20.83	25337.28	21532.01	0	0	70.25	108.56	0	0												0.979647210798372	
genus	Helicobacter	4389		209	47111	4389.58	4339.48	3519907	32625	3263020	1.0787		0.9854	0.0012	4389	0.0380		0.0144	4389	55673.00813612996	4678.261811690322	47088	23	4388.7619232995485	0.8214285714285712	1	46318	769	0	23	0	0	0	0	0.99	4300.23	38.26	0	0.82	0	0	0	0	1.00	4349.00	38.76	0	0.82	0	0	0	0	0.99	45712.52	760.59	0	23.00	0	0	0	0												0.9853935277649652	
genus	Listeria	3247		1637	50154	3247.56	3216.25	3750609	25532	3597957	1.0424		0.9853	0.0009	3247	0.0329		0.0084	3251	59253.06820740506	3460.3490489756928	50116	38	3246.2159577134003	1.3444740884469233	47	46298	3771	0	26	12	0	0	0	46.64	3011.39	158.22	0	0.66	0.47	0	0	0	47.00	3039.00	160.22	0	0.84	0.51	0	0	0	46.64	45863.12	3726.09	0	20.45	11.39	0	0	0												0.9852902526215994	
genus	Bacteroides	1028		816	1039	1028.00	1018.69	77766	407	76754	1.0132		0.9103	0.0003	1028	0.0149		0.0561	1034	1223.699528986037	1093.856630410926	1035	4	1026.1666666666667	1.8333333333333333	1018	0	17	0	4	0	0	0	0	1010.56	0	8.13	0	1.83	0	0	0	0	1018.00	0	8.17	0	1.83	0	0	0	0	1010.56	0	16.91	0	3.99	0	0	0	0												0.9103429989861845	
genus	Serratia	641		613	674	641.54	630.05	50439	495	49845	1.0119		0.9802	0.0002	641	0.0095		0.0345	656	769.6892689564348	679.8155214103571	651	23	637.7472222222223	3.788121357985535	631	3	17	3	17	3	0	0	0	623.39	1.47	5.19	0.24	2.73	0.77	0	0	0	631.00	1.50	5.25	0.25	2.76	0.78	0	0	0	623.39	2.93	16.83	2.91	16.89	2.97	0	0	0												0.9802485781565422	
genus	Stenotrophomonas	505		40323	1160	505.03	485.36	86696	1387	84859	1.0216		0.9670	0.0001	505	0.0060		0.0100	521	1291.091676959181	526.675000950656	1092	68	494.0833333333332	10.944778724887085	192	900	0	64	0	4	0	0	0	189.35	296.01	0	10.33	0	0.35	0	0	0	192.00	302.08	0	10.57	0	0.37	0	0	0	189.35	882.00	0	62.47	0	3.64	0	0	0												0.9669802970259384	
genus	Lactobacillus	285		1578	302	285.39	283.12	22592	106	22405	1.0083		0.9754	0.0001	285	0.0118		0.0424	293	355.87783403362045	304.06430129216034	301	1	285.2482142857143	0.14285714285714285	280	0	21	0	0	1	0	0	0	277.89	0	5.22	0	0	0.14	0	0	0	280.00	0	5.25	0	0	0.14	0	0	0	277.89	0	20.92	0	0	1.00	0	0	0												0.9754151134588323	
genus	Enterococcus	73		1350	242	73.32	69.58	18076	98	15970	1.1319		0.9241	0.0000	73	0.0058		0.0075	104	240.0106322552324	74.7418360262915	203	39	70.11666666666669	3.204223148949316	16	186	1	0	33	6	0	0	0	15.87	53.52	0.20	0	2.58	0.55	0	0	0	16.00	53.92	0.20	0	2.63	0.57	0	0	0	15.87	184.64	1.00	0	32.39	5.81	0	0	0												0.9241371304792102	
genus	Cardiovirus	31		12103	230	31.02	12.60	17078	325	964	17.7158		0.3790	0.0000	31	0.0154		0.1395	34	108.77329146542552	13.85753080592045	92	138	12.999999999999996	18.01944444444445	0	92	0	0	0	0	0	0	138	0	12.60	0	0	0	0	0	0	17.54	0	13.00	0	0	0	0	0	0	18.02	0	89.15	0	0	0	0	0	0	134.23												0.37904840366672127	
genus	Hepacivirus	14		11102	193	14.51	5.58	13985	63	2149	6.5077		0.9798	0.0000	14	0.0083		0.0157	16	106.408654694438	6.395783448886363	90	103	6.000000000000001	8.511904761904763	0	0	90	0	18	74	0	0	11	0	0	5.58	0	1.84	4.39	0	0	2.13	0	0	6.00	0	1.87	4.50	0	0	2.15	0	0	83.76	0	17.69	73.24	0	0	10.93												0.9798349821102459	
species	Staphylococcus aureus	1037482		1280	26511590	1037482.48	977206.44	1983333819	11896011	109959691	18.0369	Pathogen	0.9822	0.2926	1037482	0.8120		2.1584	1033412	31377606.813989118	1079807.404567245	25451453	1060137	985730.99999999	51751.48112886247	15180	25436273	1056963	2323	416	185	235	15	0	14892.08	962314.36	51029.07	153.17	16.27	6.31	14.22	1.76	0	15019.00	970712.00	51557.70	154.75	16.40	6.32	14.50	1.81	0	15051.77	25221230.29	1046416.35	2297.56	412.37	184.60	229.87	14.63	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9821782504356024	
species	Staphylococcus epidermidis	799725		1282	1511415	799725.29	782407.65	113065092	576287	4736560	23.8707		0.9748	0.2255	799725	0.9259		44.0397	805196	1808069.277793604	863599.6691436525	1466587	44828	788360.0	11365.29328498527	110133	1356454	43904	511	328	61	22	2	0	109427.87	672979.79	11096.76	96.64	69.28	10.38	2.29	0.22	0	110133.00	678227.00	11184.93	97.46	69.87	10.49	2.32	0.22	0	109427.87	1345959.57	43547.97	506.37	325.01	60.25	21.73	1.95	0												0.974782790276116	
species	Rhodobacter sphaeroides	613277		1063	1361729	613277.54	604496.79	101827740	1113270	10700607	9.5161		0.9770	0.1729	613277	0.6619		10.6871	613579	1674520.4923575746	671044.6356026247	1358261	3468	612580.999999997	696.5433427492552	164788	1193473	547	1499	0	1085	226	111	0	162549.85	441946.94	107.84	308.27	0	206.30	44.43	15.94	0	164176.00	448405.00	109.69	314.34	0	210.75	45.37	16.40	0	163151.96	1176308.91	538.32	1470.47	0	1060.91	221.20	107.84	0												0.9769665816652634	
species	Streptococcus mutans	367685		1309	1289664	367685.53	361075.78	96455321	653128	7498738	12.8629		0.9591	0.1037	367685	0.9270		12.8052	368790	1564829.655112728	399292.7056182543	1269287	20377	364504.9999999999	3180.5303867324023	21254	1248033	19808	87	285	131	42	24	0	21110.40	339965.38	3088.75	7.39	26.30	17.97	4.55	3.49	0	21254.00	343251.00	3120.31	7.47	26.46	18.14	4.62	3.53	0	21110.40	1236079.95	19607.95	86.17	283.15	129.79	41.49	23.68	0												0.9590566416272441	
species	Escherichia coli	281087		562	7029936	281087.15	88450.10	525831816	3351695	157119920	3.3467	Pathogen	0.9751	0.0793	281087	0.5144		0.2592	283050	1918657.623631009	97725.1383682257	1556289	5473647	89211.00000000003	191876.15109831304	20	1556269	61200	5401012	3365	211	608	104	7147	19.65	88430.44	3220.27	186460.15	135.85	8.47	24.18	12.47	268.18	20.00	89191.00	3253.32	188169.76	136.83	8.48	24.39	12.56	270.81	19.65	1542633.47	60558.69	5351853.59	3341.81	210.68	602.92	103.32	7077.48	perirectal swab	USA	Homo sapiens	Gastroenteritis								0.9750618358509828	
species	Methanobrevibacter smithii	192666		2173	192772	192666.86	191302.56	14422000	62424	1851959	7.7874		0.8987	0.0543	192666	0.9994		29.2895	192723	237460.06185407456	210994.54497069513	192612	160	192612.0	54.85525210084034	192612	0	78	76	3	0	3	0	0	191302.56	0	36.52	16.79	0.73	0	0.32	0	0	192612.00	0	36.83	16.96	0.74	0	0.33	0	0	191302.56	0	77.33	75.24	2.97	0	2.91	0	0												0.8986621615225011	
species	Pseudomonas aeruginosa	73983		287	1114760	73983.77	72294.88	83377223	808889	54097815	1.5412	Pathogen	0.9792	0.0209	73983	0.4674		0.1801	74016	1356793.8207017577	80186.07714916441	1100542	14218	73199.99999999987	783.7735450547493	39	1100503	12254	710	0	268	986	0	0	38.39	72256.49	667.43	36.60	0	13.55	55.93	0	0	39.00	73161.00	676.33	37.07	0	13.65	56.71	0	0	38.39	1086842.21	12091.85	700.75	0	265.87	972.05	0	0	human clinical samples	various	Acipenser sturio; aloe vera; arachis hypogaea; bemisia tabaci; Bos taurus; Brassica rapa; Canis lupus familiaris; Capra hircus; capsicum annuum; capsicum frutescens; carica papaya; chamaesyce hirta; chromolaena odorata; cicer arietinum; citrullus lanatus; conus leopardus; conus litteratus; Culex quinquefasciatus; curcuma longa; Cyprinus carpio; diabrotica virgifera; Equus caballus; etroplus maculatus; etroplus suratensis; euonymus japonicus; eutrema wasabi; gallus gallus; glomus mosseae; glycine max; gossypium hirsutum; Helicoverpa armigera; Homo sapiens; hyriopsis cumingii; Labeo rohita; larimichthys crocea; Leptinotarsa decemlineata; ligustrum sinense; luffa aegyptiaca; malus x domestica; Mangifera indica; mimosa pudica; Moschus berezovskii; Musa acuminata; Musca domestica; Nicotiana glauca; Nicotiana tabacum; Onchorhynchus mykiss; oryctes rhinoceros; oryctolagus cuniculus; Oryza sativa; ostrinia nubilalis; Ovis aries; panax ginseng; parthenium hysterophorus; Phaseolus vulgaris; pheretima sieboldi; phlebotomus papatasi; piper nigrum; pisum sativum; poekilocerus pictus; praecitrullus fistulosus; rhynchophorus ferrugineus; sesamum indicum; siganus canaliculatus; Solanum lycopersicum; Solanum melongena; Solanum tuberosum; solenopsis invicta; spodoptera litura; suaeda maritima; Sus scrofa; Sus scrofa domesticus; triticum aestivum; vicia faba; yunnanacris yunnaneus; Zea mays; Zingiber officinale	Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis								0.9792146023314743	
species	Clostridium beijerinckii	61975		1520	62512	61975.00	61250.67	4676857	19739	3216284	1.4541		0.9595	0.0175	61975	0.5360		2.9096	62171	76018.23808477193	67545.81561604694	61661	851	61661.0	314.004102841603	61661	0	817	8	12	0	10	4	0	61250.67	0	306.71	0.68	1.52	0	2.22	0.37	0	61661.00	0	309.18	0.68	1.53	0	2.24	0.38	0	61250.67	0	810.47	7.99	11.92	0	9.93	3.93	0												0.959532543102782	
species	Streptococcus agalactiae	21295		1311	127104	21295.26	20477.22	9505382	64763	6642414	1.4310	Pathogen	0.9736	0.0060	21295	0.4540		0.4100	21514	150288.3069604132	22644.89872715204	121904	5200	20671.999999999993	623.2562804730265	1404	120500	5134	0	1	42	19	4	0	1394.65	19082.57	601.65	0	0.25	12.12	2.10	0.15	0	1404.00	19268.00	608.52	0	0.25	12.23	2.10	0.15	0	1394.65	119345.09	5069.77	0	1.00	41.60	18.91	3.89	0	human clinical samples	USA: Salinas; California; Brazil:Rio de Janeiro; China: Guangxi Province; Canada: Greater Toronto Area; Singapore; USA: Houston; USA: San Antonio	Canis lupus familiaris breed Parson Russell Terrier and Chihuahua mix	Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis								0.9736371645557661	
species	Acinetobacter baumannii	14854		470	148802	14854.33	13528.29	11133118	109000	9518076	1.1697	Pathogen	0.9704	0.0042	14854	0.1872		0.0823	14891	165695.1268521664	15003.12175730817	134401	14401	13696.000000000004	1158.3334396683472	780	133621	14289	35	0	66	11	0	0	773.48	12754.81	1137.88	2.03	0	4.22	0.60	0	0	780.00	12916.00	1151.44	2.04	0	4.24	0.61	0	0	773.48	131973.83	14129.56	34.84	0	65.68	10.85	0	0	Bodily fluid; human clinical samples	Colombia; UK; Canada; US; Malaysia; India; Australia; South Korea; China	Homo sapiens	Nosocomial infections								0.9703808789336213	
species	Shigella flexneri	12443		623	355432	12443.07	5.88	26585228	180706	9037745	2.9416		0.9515	0.0035	12443	0.4903		0.1902	11570	9.86273178635078	6.5726292745216846	8	355424	6.0	12437.069309448805	5	3	0	355087	164	4	22	0	147	4.95	0.93	0	12306.62	5.46	0.13	0.71	0	4.75	5.00	1.00	0	12425.95	5.50	0.13	0.71	0	4.79	4.95	2.80	0	351717.87	162.91	4.00	22.00	0	145.77												0.9514543023955735	
species	Bacillus cereus	10247		1396	53250	10247.93	6188.03	3980195	33825	3640404	1.0933	Pathogen	0.9753	0.0029	10247	0.0531		0.0421	11417	15929.544676429805	6835.53444550255	12921	40329	6239.999999999998	4007.9294389438646	2370	10551	40165	0	125	0	39	0	0	2354.55	3833.48	3938.25	0	4.50	0	16.95	0	0	2370.00	3870.00	3986.00	0	4.85	0	17.08	0	0	2354.55	10444.04	39665.23	0	115.76	0	38.69	0	0	Clinical sample (blood)	USA	Homo sapiens	Anthrax-like illness								0.9753277494618586	
species	Propionibacterium acnes	8045		1747	67579	8045.68	7909.42	5055151	42511	4496996	1.1241	Pathogen	0.9232	0.0023	8045	0.1790		0.0902	8046	82681.74624792518	8760.219384724986	67066	513	7997.0	48.682362082362054	5	67061	0	495	0	18	0	0	0	4.96	7904.46	0	46.42	0	1.71	0	0	0	5.00	7992.00	0	46.95	0	1.73	0	0	0	4.96	66322.96	0	489.61	0	17.67	0	0	0			Bos taurus; Canis lupus familiaris; eisenia fetida; Equus caballus; Homo sapiens; Ovis aries; Sus scrofa; Sus scrofa domesticus	Abscesses; endocarditis; bacteraemia; septic arthritis; endophthalmitis								0.9231576304576308	
species	Deinococcus radiodurans	7166		1299	7182	7166.30	7088.50	537211	3963	486177	1.1050		0.9542	0.0020	7166	0.1588		0.6596	7173	8833.309156150419	7843.337600929211	7165	17	7160.0	6.300000000000001	7165	0	15	0	0	0	0	2	0	7088.50	0	6.07	0	0	0	0	0.13	0	7160.00	0	6.15	0	0	0	0	0.15	0	7093.43	0	14.83	0	0	0	0	1.72	0												0.9541545988001946	
species	Shigella boydii	6720		621	190375	6720.93	2.99	14240012	95425	4675669	3.0456	Pathogen	0.9559	0.0019	6720	0.5118		0.2073	6367	3.698524419881543	3.2863146372608423	3	190372	3.0	6717.929466113617	3	0	1	190205	86	2	10	0	68	2.99	0	0.33	6648.80	2.78	0.06	0.32	0	2.17	3.00	0	0.33	6712.21	2.80	0.06	0.32	0	2.19	2.99	0	0.99	188425.76	85.40	2.00	9.97	0	67.39	Cases of diarrhea	NA	Homo sapiens	Dysentery								0.9559358471455726	
species	Neisseria meningitidis	4396		487	43478	4396.43	3045.85	3250222	28318	2998106	1.0841	Pathogen	0.9796	0.0012	4396	0.0963		0.0398	4558	31638.41072914001	3375.0451324668848	25663	17815	3080.9999999999995	1315.4251964409862	21	25642	17648	0	0	61	106	0	0	20.83	3025.02	1284.85	0	0	3.70	10.93	0	0	21.00	3060.00	1300.59	0	0	3.74	11.09	0	0	20.83	25337.28	17435.61	0	0	60.35	104.65	0	0	human clinical samples		Homo sapiens	meningococcal disease								0.979647210798372	
species	Helicobacter pylori	4389		210	47111	4389.58	4301.22	3519907	32625	3263020	1.0787	Pathogen	0.9854	0.0012	4389	0.0380		0.0144	4389	57103.984201497726	4765.156224028222	46319	792	4350.0	39.58335187097688	1	46318	769	0	23	0	0	0	0	0.99	4300.23	38.26	0	0.82	0	0	0	0	1.00	4349.00	38.76	0	0.82	0	0	0	0	0.99	45712.52	760.59	0	23.00	0	0	0	0	Gastric biopsy	Mexico; Australia: Perth; Taiwan: Taipei	Homo sapiens	Gastric ulcer								0.9853935277649652	
species	Listeria monocytogenes	3247		1639	50154	3247.56	3058.03	3750609	25532	3597957	1.0424	Pathogen	0.9853	0.0009	3247	0.0329		0.0084	3251	57136.038079803366	3380.5223235289864	46345	3809	3086.0	161.5604318018471	47	46298	3771	0	26	12	0	0	0	46.64	3011.39	158.22	0	0.66	0.47	0	0	0	47.00	3039.00	160.22	0	0.84	0.51	0	0	0	46.64	45863.12	3726.09	0	20.45	11.39	0	0	0	human clinical samples		apodemus agrarius; apodemus peninsulae; Bos taurus; Capra hircus; cavia porcellus; Cervus elaphus; chinchilla brevicaudata; Homo sapiens; lama pacos; microtus arvalis; myodes glareolus; myodes rufocanus; myodes rutilus; oryctolagus cuniculus; Ovis aries; rattus rattus; Sus scrofa; vulpes lagopus	listerosis								0.9852902526215994	
species	Shigella dysenteriae	2486		622	67737	2486.17	5.89	5065901	35126	1834196	2.7619		0.9598	0.0007	2486	0.4198		0.1603	2365	7.397048839763086	6.5726292745216846	6	67731	6.0	2480.1660178068455	6	0	0	67626	33	2	7	0	63	5.89	0	0	2451.76	1.06	0.07	0.23	0	2.21	6.00	0	0	2476.57	1.06	0.07	0.23	0	2.23	5.89	0	0	66967.05	32.73	2.00	6.99	0	62.33												0.9598089116884359	
species	Staphylococcus argenteus	2300		985002	41111	2300.41	46.20	3073272	23400	269671	11.3964		0.8487	0.0006	2300	0.0976		0.2346	2321	57.94354924481084	51.4855959837532	47	41064	47.0	2253.410199407475	47	0	40984	53	16	6	4	1	0	46.20	0	2221.12	2.12	0.66	0.21	0.22	0.11	0	47.00	0	2250.06	2.14	0.67	0.21	0.23	0.11	0	46.20	0	40539.55	52.64	15.75	6.00	3.85	0.97	0												0.8486679702011525	
species	Bacillus thuringiensis	1642		1428	17935	1642.64	2.93	1339213	14988	1234448	1.0849	Pathogen	0.7967	0.0005	1642	0.0187		0.0070	1033	3.698524419881543	3.2863146372608423	3	17932	3.0	1639.640442002615	3	0	17822	0	109	0	1	0	0	2.93	0	1609.64	0	3.75	0	0.17	0	0	3.00	0	1635.41	0	4.07	0	0.17	0	0	2.93	0	17551.63	0	100.77	0	1.00	0	0	soil	China: Wuhan	Invertebrate	None								0.7966713647296619	
species	Staphylococcus haemolyticus	1466		1283	4824	1466.89	303.55	359460	3652	32987	10.8970	Pathogen	0.8315	0.0004	1466	0.0123		0.1539	971	379.71517377450505	337.3949694254465	308	4516	308.0	1158.8852505257541	308	0	4357	114	38	5	2	0	0	303.55	0	1124.11	10.67	3.12	0.46	0.13	0	0	308.00	0	1144.27	10.79	3.20	0.49	0.13	0	0	303.55	0	4284.15	112.73	37.00	4.76	1.92	0	0	blood	Brazil: Sao Paulo	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.8314835329102812	
species	Bacteroides vulgatus	1028		821	1039	1028.00	1010.56	77766	407	76754	1.0132	Pathogen	0.9103	0.0003	1028	0.0149		0.0561	1034	1255.0326198131368	1115.156100243846	1018	21	1018.0	10.0	1018	0	17	0	4	0	0	0	0	1010.56	0	8.13	0	1.83	0	0	0	0	1018.00	0	8.17	0	1.83	0	0	0	0	1010.56	0	16.91	0	3.99	0	0	0	0	healthy mouse fecal sample	Germany	Mus musculus	commensal; sepsis; abscess or surgical infections								0.9103429989861845	
species	Staphylococcus lugdunensis	676		28035	4459	676.58	12.73	331575	3080	45410	7.3018	Pathogen	0.7617	0.0002	676	0.0086		0.0363	334	18.492622099407715	14.24069676146365	15	4444	13.0	663.5786623592713	11	4	4285	107	39	10	1	2	0	10.77	1.96	634.45	10.44	3.89	0.75	0.07	0.22	0	11.00	2.00	647.87	10.61	3.98	0.82	0.08	0.22	0	10.77	3.92	4209.45	105.33	38.12	9.41	0.97	1.95	0	Abscess	USA:DC	Homo sapiens	infection								0.7616745774739532	
species	Serratia marcescens	641		615	674	641.54	624.85	50439	495	49845	1.0119	Pathogen	0.9802	0.0002	641	0.0095		0.0345	656	781.6214940682994	692.8646693558276	634	40	632.5	9.035343580207755	631	3	17	3	17	3	0	0	0	623.39	1.47	5.19	0.24	2.73	0.77	0	0	0	631.00	1.50	5.25	0.25	2.76	0.78	0	0	0	623.39	2.93	16.83	2.91	16.89	2.97	0	0	0	Respiratory	USA:Virginia; South Korea; Mexico	Homo sapiens	Septicaemia; abscesses; burn infections; osteomyelitis								0.9802485781565422	
species	Staphylococcus warneri	517		1292	2931	517.13	3.96	217736	2229	29244	7.4455	Pathogen	0.7628	0.0001	517	0.0118		0.0586	262	4.93136589317539	4.381752849681123	4	2927	4.0	513.129336880073	4	0	2840	46	12	25	3	1	0	3.96	0	490.82	4.76	1.07	4.30	0.20	0.11	0	4.00	0	502.55	4.83	1.09	4.34	0.21	0.11	0	3.96	0	2783.73	45.32	11.81	24.75	2.88	0.97	0			Bos taurus; Culex quinquefasciatus; gallus gallus; Homo sapiens; medicago truncatula; Musca domestica; Nicotiana glauca; Phaseolus vulgaris; prunus dulcis; Sus scrofa; Zea mays	infection								0.7628065888686026	
species	Stenotrophomonas maltophilia	505		40324	1160	505.03	485.36	86696	1387	84859	1.0216	Pathogen	0.9670	0.0001	505	0.0060		0.0100	521	1346.2628888368815	541.2377634533202	1092	68	494.0833333333332	10.944778724887085	192	900	0	64	0	4	0	0	0	189.35	296.01	0	10.33	0	0.35	0	0	0	192.00	302.08	0	10.57	0	0.37	0	0	0	189.35	882.00	0	62.47	0	3.64	0	0	0	blood	USA: New York; NY	Homo sapiens	Bacteraemia; meningitis; wound infection; UTI; pneumonia								0.9669802970259384	
species	Staphylococcus pseudintermedius	387		283734	2746	387.84	1.44	205129	946	16589	12.3654		0.8905	0.0001	387	0.0064		0.0425	454	3.698524419881543	1.6431573186304211	3	2743	1.5	386.336075399929	0	3	2688	43	10	2	0	0	0	0	1.44	376.88	5.33	0.68	0.14	0	0	0	0	1.50	380.08	5.40	0.72	0.14	0	0	0	0	2.88	2665.65	42.43	9.53	1.95	0	0	0												0.8905148918292846	
species	Streptococcus pneumoniae	364		1313	6916	364.62	266.73	514857	4061	479655	1.0734		0.9584	0.0001	364	0.0084		0.0018	329	5837.504376046369	294.67287914105543	4735	2181	268.9999999999999	95.62172488730124	14	4721	2075	56	0	11	19	20	0	13.89	252.84	89.02	1.70	0	0.39	0.63	0.74	0	14.00	255.00	91.97	1.84	0	0.41	0.64	0.77	0	13.89	4682.05	2014.35	51.89	0	10.73	18.49	19.20	0												0.9583688366824414	
species	Lactobacillus gasseri	285		1596	302	285.39	277.89	22592	106	22405	1.0083		0.9754	0.0001	285	0.0118		0.0424	293	345.1956125222773	306.72269947767865	280	22	280.0	5.391071428571431	280	0	21	0	0	1	0	0	0	277.89	0	5.22	0	0	0.14	0	0	0	280.00	0	5.25	0	0	0.14	0	0	0	277.89	0	20.92	0	0	1.00	0	0	0												0.9754151134588323	
species	Streptococcus dysgalactiae	275		1334	1458	275.50	1.00	108480	981	74701	1.4522		0.8109	0.0001	275	0.0087		0.0090	268	1.2328414732938475	1.0954382124202808	1	1457	1.0	274.49968522526217	1	0	1455	0	2	0	0	0	0	1.00	0	270.62	0	0.29	0	0	0	0	1.00	0	274.21	0	0.29	0	0	0	0	1.00	0	1430.32	0	2.00	0	0	0	0												0.8108694971767518	
species	Acinetobacter pittii	153		48296	1127	153.93	28.67	84251	1165	75320	1.1186		0.7466	0.0000	153	0.0195		0.0112	135	35.75240272552158	31.767708160188143	29	1098	29.0	124.93168775668775	29	0	1095	1	0	2	0	0	0	28.67	0	122.52	0.06	0	0.12	0	0	0	29.00	0	124.76	0.06	0	0.12	0	0	0	28.67	0	1076.16	1.00	0	1.99	0	0	0												0.746601552615303	
species	Acinetobacter oleivorans	100		1148157	792	100.66	22.69	59213	807	53595	1.1048		0.7715	0.0000	100	0.0129		0.0068	82	28.355353885758493	25.195078885666458	23	769	23.0	77.66079645328874	23	0	759	3	0	6	1	0	0	22.69	0	75.65	0.17	0	0.41	0.05	0	0	23.00	0	77.01	0.17	0	0.42	0.06	0	0	22.69	0	746.11	2.99	0	5.97	0.99	0	0												0.7714732254803766	
species	Enterococcus faecalis	73		1351	242	73.32	69.38	18076	98	15970	1.1319		0.9241	0.0000	73	0.0058		0.0075	104	249.03397760535722	76.58938835171799	202	40	69.91666666666669	3.404223148949316	16	186	1	0	33	6	0	0	0	15.87	53.52	0.20	0	2.58	0.55	0	0	0	16.00	53.92	0.20	0	2.63	0.57	0	0	0	15.87	184.64	1.00	0	32.39	5.81	0	0	0												0.9241371304792102	
species	Cardiovirus A	31		1821749	230	31.02	12.60	17078	325	964	17.7158		0.3790	0.0000	31	0.0154		0.1395	34	113.42141554303397	14.240696761463646	92	138	12.999999999999996	18.01944444444445	0	92	0	0	0	0	0	0	138	0	12.60	0	0	0	0	0	0	17.54	0	13.00	0	0	0	0	0	0	18.02	0	89.15	0	0	0	0	0	0	134.23												0.37904840366672127	
strain	Staphylococcus epidermidis ATCC 12228	456813		176280	816532	456813.47	109097.19	61086886	265423	2479594	24.6358	Pathogen	0.9748	0.1267	456813	0.9921		51.4923	501863	7749965.99574033	674618.1128264085	109799	706733	109799.0	347014.47427930386	109799	678227	27997	303	164	30	11	1	0	109097.19	336777.78	7737.77	66.05	34.68	5.16	1.14	0.11	0	109799.00	339113.50	7792.96	66.55	34.97	5.22	1.16	0.11	0	109097.19	673555.56	27795.52	300.56	162.53	29.64	10.87	0.97	0	NA	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.974782790276116	
strain	Staphylococcus epidermidis RP62A	342911		176279	694883	342911.82	330.68	51978206	310864	2256966	23.0301	Pathogen	0.9690	0.0951	342911	0.8626		36.9211	303333	23574.792507921476	2052.135717848254	334	694549	334.0	342577.81900568143	334	678227	15907	208	164	31	11	1	0	330.68	336202.01	3358.99	30.59	34.60	5.21	1.14	0.11	0	334.00	339113.50	3391.97	30.91	34.90	5.27	1.16	0.11	0	330.68	672404.01	15752.45	205.81	162.48	30.61	10.87	0.97	0	patient with intravascular catheter-associated sepsis	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.968986966902909	
strain	Rhodobacter sphaeroides 2.4.1	340923		272943	616716	340923.29	162491.77	46133408	362940	4106014	11.2356		0.9770	0.0945	340923	0.9938		23.2468	443254	11626960.61512689	1008342.0758522941	164727	451989	164115.0	176808.2942857701	164727	450859	165	481	0	365	81	38	0	162491.77	174695.41	34.20	103.68	0	73.03	18.08	6.31	0	164115.00	176569.30	34.74	105.20	0	74.32	18.31	6.42	0	163093.88	446066.67	162.57	474.23	0	358.27	79.95	37.35	0												0.9769665816652634	
strain	Methanobrevibacter smithii ATCC 35061	192666		420247	192772	192666.86	191302.56	14422000	62424	1851959	7.7874		0.8987	0.0534	192666	0.9994		29.2895	192723	13595173.456693927	1183431.032593377	192612	160	192612.0	54.85525210084034	192612	0	78	76	3	0	3	0	0	191302.56	0	36.52	16.79	0.73	0	0.32	0	0	192612.00	0	36.83	16.96	0.74	0	0.33	0	0	191302.56	0	77.33	75.24	2.97	0	2.91	0	0												0.8986621615225011	
strain	Staphylococcus aureus subsp. aureus ST228	176893		1074919	5034150	176893.51	22.81	376614452	2251857	19438686	19.3745	Pathogen	0.9803	0.0490	176893	0.8805		2.2574	164729	12987.31084268728	141.31473506140674	184	5033966	23.0	176870.50826436715	184	4865199	168225	418	85	26	13	0	0	22.81	169477.73	5873.56	15.87	3.38	0.88	0.45	0	0	23.00	170914.60	5935.10	16.04	3.41	0.88	0.47	0	0	182.51	4824252.36	166530.29	413.49	84.20	25.96	12.45	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9803155877915044	
strain	Rhodobacter sphaeroides ATCC 17029	147557		349101	392838	147557.96	23.83	29371754	385484	3352249	8.7618		0.9348	0.0409	147557	0.7677		9.5196	97492	1764.5802775390327	153.60297289283338	25	392813	25.0	147532.95751619452	25	391766	169	446	0	328	70	34	0	23.83	144905.76	32.30	91.73	0	61.80	13.65	4.64	0	25.00	147324.94	32.82	93.39	0	63.08	13.96	4.77	0	23.83	385432.35	166.47	438.41	0	320.92	68.44	33.19	0												0.9347523735261468	
strain	Rhodobacter sphaeroides KD131	121866		557760	341212	121866.49	32.35	25509490	351144	3059446	8.3379		0.9305	0.0338	121866	0.6874		7.7144	71910	2399.8291774530844	208.9000431342534	34	341178	34.0	121832.49023236781	34	340183	171	428	0	307	55	34	0	32.35	119551.84	32.80	86.51	0	58.03	9.89	4.46	0	34.00	121636.79	33.32	88.24	0	59.35	10.15	4.63	0	32.35	334437.24	168.49	419.81	0	300.33	53.64	32.75	0												0.9305012632339369	
strain	Streptococcus mutans UA159	121705		210007	370366	121705.88	21090.83	27704980	126386	2031856	13.6353	Pathogen	0.9591	0.0337	121705	0.9995		16.8658	162306	1498763.9045305527	130464.22105625697	21234	349132	21234.0	100471.87771749777	21234	343224	5755	23	74	39	11	6	0	21090.83	98739.56	999.88	1.91	7.23	5.33	1.18	0.87	0	21234.00	99447.67	1007.56	1.93	7.27	5.38	1.19	0.88	0	21090.83	340761.48	5710.47	22.81	73.56	38.65	10.87	5.92	0	child with active dental caries	NA	Homo sapiens	Dental caries								0.9590566416272441	
strain	Streptococcus mutans GS-5	88479		1198676	321448	88479.78	15.79	24040548	172580	1887304	12.7380	Pathogen	0.9303	0.0245	88479	0.9310		12.2967	78722	1129.3313776249809	98.30590265141336	16	321432	16.0	88463.78125184258	16	316267	5016	22	72	39	10	6	0	15.79	86788.99	773.27	1.88	7.18	5.33	1.10	0.87	0	16.00	87666.00	781.29	1.89	7.21	5.38	1.12	0.88	0	15.79	313111.51	4964.40	21.83	71.61	38.65	9.87	5.92	0	NA	NA	Homo sapiens	Dental caries								0.9303159614092731	
strain	Streptococcus mutans NN2025	79504		511691	300447	79504.21	1.89	22468613	176896	1794526	12.5206	Pathogen	0.9265	0.0220	79504	0.8912		11.1234	64857	141.1664222031226	12.28823783142667	2	300445	2.0	79502.2148117085	2	295801	4527	20	64	16	11	6	0	1.89	77969.17	659.72	1.73	4.76	2.47	1.18	0.87	0	2.00	78823.50	667.58	1.75	4.80	2.51	1.19	0.88	0	1.89	292630.49	4474.69	19.75	63.48	15.80	10.87	5.92	0	NA	Japan	Homo sapiens	Dental caries; Endocarditis								0.9265270432524417	
strain	Streptococcus mutans LJ23	77995		1155071	297403	77995.66	1.89	22241180	177266	1785052	12.4597	Pathogen	0.9259	0.0216	77995	0.8856		10.9013	62905	141.1664222031226	12.28823783142667	2	297401	2.0	77993.65660568341	2	292741	4510	22	75	37	10	6	0	1.89	76467.66	655.88	1.88	7.13	4.84	1.10	0.87	0	2.00	77313.83	663.88	1.89	7.17	4.88	1.11	0.88	0	1.89	289576.47	4458.39	21.79	74.49	36.68	9.89	5.92	0	NA	NA	Homo sapiens	Dental caries								0.9258939659319259	
strain	Clostridium beijerinckii NCIMB 8052	61975		290402.1	62512	61975.00	61250.67	4676857	19739	3216284	1.4541		0.9595	0.0172	61975	0.5360		2.9096	62171	4352231.379733372	378852.51646179997	61661	851	61661.0	314.004102841603	61661	0	817	8	12	0	10	4	0	61250.67	0	306.71	0.68	1.52	0	2.22	0.37	0	61661.00	0	309.18	0.68	1.53	0	2.24	0.38	0	61250.67	0	810.47	7.99	11.92	0	9.93	3.93	0												0.959532543102782	
strain	Staphylococcus aureus subsp. aureus CN1	35196		1193576	676631	35196.30	4058.57	50619925	283534	2476145	20.4430	Pathogen	0.9764	0.0098	35196	0.9000		3.6040	48989	288544.1669831826	25117.158127436116	4088	672543	4088.0	31108.30279345704	4088	637666	34787	63	9	5	13	0	0	4058.57	27738.29	3105.94	2.46	0.36	0.17	0.90	0	0	4088.00	27967.05	3137.32	2.48	0.36	0.17	0.91	0	0	4058.57	632544.52	34459.60	62.44	8.92	5.00	12.83	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9763956034879059	
strain	Staphylococcus aureus subsp. aureus ST72	35196		1196216	676631	35196.30	4058.57	50619925	283534	2476145	20.4430	Pathogen	NA	0.0098	35196	0.9000		3.6040	48989	288544.1669831826	25117.158127436116	4088	672543	4088.0	31108.30279345704	4088	637666	34787	63	9	5	13	0	0	4058.57	27738.29	3105.94	2.46	0.36	0.17	0.90	0	0	4088.00	27967.05	3137.32	2.48	0.36	0.17	0.91	0	0	4058.57	632544.52	34459.60	62.44	8.92	5.00	12.83	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								NA	
strain	Staphylococcus aureus subsp. aureus 11819-97	30482		1123523	643328	30482.66	2517.00	48128710	273890	2437713	19.7434	Pathogen	0.9801	0.0085	30482	0.8564		3.0168	40390	178999.0233535595	15581.485570249019	2536	640792	2536.0	27946.65875730402	2536	615122	25589	66	11	3	1	0	0	2517.00	26300.87	1408.21	2.57	0.46	0.10	0.03	0	0	2536.00	26521.60	1421.87	2.60	0.46	0.10	0.03	0	0	2517.00	610125.00	25342.05	65.35	10.93	3.00	0.93	0	0	skin abscess	Denmark	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.980149379178296	
strain	Staphylococcus aureus subsp. aureus str. Newman	28419		426430	673673	28419.85	137.64	50398771	295258	2511206	20.0695	Pathogen	0.9788	0.0079	28419	0.8723		2.7811	27702	9811.066343117021	854.0325292841536	139	673534	139.0	28280.84837915818	139	648571	24880	48	14	6	15	0	0	137.64	27059.08	980.73	1.82	0.55	0.21	0.96	0	0	139.00	27286.72	990.55	1.84	0.55	0.21	0.98	0	0	137.64	643187.59	24639.49	47.53	13.88	5.97	14.73	0	0	NA	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9788348510614772	
strain	Staphylococcus aureus M1	28284		1305598	658931	28284.50	7.85	49295192	289098	2481413	19.8658	Pathogen	0.9663	0.0078	28284	0.8664		2.7821	27190	564.6656888124904	49.15295132570668	8	658923	8.0	28276.501120009256	8	627933	30773	198	1	4	14	0	0	7.85	23858.22	4136.97	42.73	0.04	0.13	0.93	0	0	8.00	24058.55	4173.71	43.12	0.04	0.13	0.95	0	0	7.85	622715.87	30475.99	196.13	0.99	4.00	13.76	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9662915462181253	
strain	Staphylococcus aureus subsp. aureus MW2	26938		196620	640345	26938.03	7.92	47904876	273648	2430950	19.7062	Pathogen	0.9796	0.0075	26938	0.8619		2.6907	32102	564.6656888124904	49.15295132570668	8	640337	8.0	26930.02859482957	8	617441	22809	69	14	3	1	0	0	7.92	25738.51	962.16	2.65	0.57	0.11	0.03	0	0	8.00	25954.26	972.36	2.68	0.58	0.11	0.03	0	0	7.92	612406.89	22582.12	68.29	13.89	2.99	0.93	0	0	community acquired	USA: North Dakota	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9796030781337155	
strain	Staphylococcus aureus subsp. aureus USA300_TCH1516	26896		451516	666065	26896.66	1.97	49829122	292693	2491616	19.9987	Pathogen	0.9722	0.0075	26896	0.8673		2.6375	25870	141.1664222031226	12.28823783142667	2	666063	2.0	26894.661347543268	2	634536	31326	169	13	5	14	0	0	1.97	24195.22	2447.24	22.03	0.52	0.17	0.93	0	0	2.00	24397.75	2473.01	22.26	0.52	0.17	0.95	0	0	1.97	629273.35	31011.53	167.20	12.87	5.00	13.80	0	0	NA	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9722371504590431	
strain	Staphylococcus aureus subsp. aureus MSSA476	26844		282459	638455	26844.44	3.95	47763311	272602	2424162	19.7030	Pathogen	0.9794	0.0074	26844	0.8658		2.7011	31670	282.3328444062452	24.57647566285334	4	638451	4.0	26840.44124062505	4	616125	22239	69	15	2	1	0	0	3.95	25673.24	938.34	2.65	0.61	0.06	0.03	0	0	4.00	25888.90	948.14	2.68	0.62	0.06	0.03	0	0	3.95	611099.12	22020.37	68.17	14.91	2.00	0.93	0	0	community acquired	United Kingdom	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9794273167682775	
strain	Escherichia coli DH1	25647		536056	512265	25647.56	2.00	38319665	215543	8785214	4.3618	Pathogen	0.9748	0.0071	25647	0.9495		0.7809	29048	141.1664222031226	12.28823783142667	2	512263	2.0	25645.556963869047	2	170921	6681	333828	204	15	40	30	544	2.00	12322.69	477.04	12597.53	13.87	0.64	2.59	3.64	22.05	2.00	12417.41	481.02	12704.01	13.96	0.64	2.61	3.65	22.26	2.00	169600.77	6623.01	331002.97	202.71	14.97	39.67	29.92	538.93	perirectal swab	USA	Homo sapiens	Gastroenteritis								0.9748473890819496	
strain	Staphylococcus aureus subsp. aureus NCTC 8325	25256		93061.1	653582	25256.73	24.81	48895667	286398	2459071	19.8838	Pathogen	0.9790	0.0070	25256	0.8716		2.5219	24132	1764.5802775390327	153.60297289283338	25	653557	25.0	25231.72903508736	25	631781	21686	49	9	4	14	14	0	24.81	24190.19	824.85	1.86	0.36	0.13	0.93	1.66	0	25.00	24393.58	833.14	1.88	0.36	0.13	0.95	1.70	0	24.81	626536.12	21473.79	48.47	8.96	3.99	13.80	13.65	0	NA	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9790073399292214	
strain	Staphylococcus aureus subsp. aureus TW20	22962		663951	593630	22962.90	61.44	44409107	264074	2386913	18.6052	Pathogen	0.9822	0.0064	22962	0.7843		2.1258	22063	4376.159088296801	380.9353727742268	62	593568	62.0	22900.897486141752	62	572278	21208	51	13	4	14	0	0	61.44	21857.07	845.15	1.96	0.52	0.13	0.93	0	0	62.00	22043.64	853.67	1.98	0.52	0.13	0.95	0	0	61.44	567459.99	20997.84	50.47	12.91	4.00	13.80	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9821725771469585	
strain	Staphylococcus aureus Bmb9393	22843		1321369	587971	22843.65	460.71	43986429	261801	2374736	18.5227	Pathogen	0.9816	0.0063	22843	0.7967		2.1592	21388	32750.609951124447	2850.8711768909875	464	587507	464.0	22379.645635618348	464	566663	20799	22	7	2	14	0	0	460.71	21365.44	820.95	0.71	0.26	0.07	0.93	0	0	464.00	21548.47	829.19	0.72	0.26	0.07	0.95	0	0	460.71	561898.29	20591.64	21.72	6.88	2.00	13.80	0	0	patient with blood stream infection	Brazil: Rio de Janeiro	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9815634974749197	
strain	Staphylococcus aureus subsp. aureus str. JKD6008	22686		546342	588759	22686.50	212.13	44045216	261994	2371139	18.5756	Pathogen	0.9822	0.0063	22686	0.8108		2.1855	21522	15104.80717573412	1314.8414479626538	214	588545	214.0	22472.503680726586	214	567347	21099	61	16	6	16	0	0	212.13	21493.44	782.79	2.38	0.65	0.21	1.04	0	0	214.00	21677.26	790.92	2.40	0.65	0.21	1.06	0	0	212.13	562576.83	20889.36	60.39	15.91	5.97	15.71	0	0	clinical isolate	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9821782504356024	
strain	Staphylococcus aureus subsp. aureus ED98	22499		681288	626306	22499.29	37.45	46854871	280896	2430666	19.2766	Pathogen	0.9790	0.0062	22499	0.8606		2.2442	21091	2682.16202185933	233.47651879710673	38	626268	38.0	22461.292580911617	38	607497	18709	55	5	2	0	0	0	37.45	21577.34	688.16	2.15	0.22	0.07	0	0	0	38.00	21763.55	695.28	2.17	0.22	0.07	0	0	0	37.45	602367.79	18519.60	54.52	4.97	2.00	0	0	0	broiler Gallus gallus	Northern Ireland	Gallus gallus	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9790012750431202	
strain	Staphylococcus aureus subsp. aureus HO 5096 0412	20817		1074252	487542	20817.94	987.20	36471652	218815	2166318	16.8358	Pathogen	0.9776	0.0058	20817	0.7649		2.0707	24636	70300.87825715507	6119.542440050483	996	486546	996.0	19821.944246874154	996	462933	23588	17	5	2	1	0	0	987.20	18480.31	1158.55	0.55	0.18	0.07	0.07	0	0	996.00	18650.25	1170.82	0.55	0.18	0.07	0.08	0	0	987.20	459004.67	23354.56	16.81	4.95	2.00	0.97	0	0	NA	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9776234940629249	
strain	Staphylococcus aureus subsp. aureus JKD6159	19070		869816	395037	19070.91	2147.69	29551489	187545	1997234	14.7962	Pathogen	0.9779	0.0053	19070	0.7104		1.9110	19812	153377.31772369271	13351.170403845077	2173	392864	2173.0	16897.907495005962	2173	369834	23001	22	2	4	1	0	0	2147.69	15619.74	1109.42	0.71	0.06	0.13	0.03	0	0	2173.00	15775.51	1121.45	0.72	0.06	0.13	0.03	0	0	2147.69	366573.33	22769.64	21.68	1.97	4.00	0.93	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9778817894390917	
strain	Staphylococcus aureus subsp. aureus ED133	18264		685039	407296	18264.40	2248.84	30468256	192152	2079396	14.6525	Pathogen	0.9785	0.0051	18264	0.7341		1.8166	18644	159941.5563561379	13922.573463006418	2266	405030	2266.0	15998.396137518952	2266	387542	17460	17	4	7	0	0	0	2248.84	15116.79	724.20	0.55	0.14	0.24	0	0	0	2266.00	15263.88	733.58	0.55	0.14	0.24	0	0	0	2248.84	384125.13	17279.63	16.84	3.96	6.99	0	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9785348450935686	
strain	Staphylococcus aureus CA-347	17315		1323661	362457	17315.88	293.44	27113053	171145	1884009	14.3911	Pathogen	0.9756	0.0048	17315	0.6609		1.7114	18373	20892.630486062146	1818.6591990511472	296	362161	296.0	17019.88313220141	296	338207	23925	17	7	4	1	0	0	293.44	15759.91	1094.80	0.55	0.26	0.14	0.03	0	0	296.00	15912.49	1106.41	0.55	0.26	0.14	0.03	0	0	293.44	335215.63	23687.61	16.81	6.97	4.00	0.97	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9756466889181321	
strain	Staphylococcus aureus subsp. aureus 6850	16879		1392476	406458	16879.46	611.87	30405619	192662	2073504	14.6639	Pathogen	0.9758	0.0047	16879	0.7577		1.7377	17058	43691.00767186645	3803.209608826555	619	405839	619.0	16260.464512850534	619	383542	22277	12	5	2	1	0	0	611.87	15025.64	1076.97	0.40	0.17	0.07	0.03	0	0	619.00	15170.96	1088.84	0.40	0.17	0.07	0.03	0	0	611.87	380152.43	22055.35	11.89	4.96	2.00	0.93	0	0	patient with a complicated S	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9757737624597745	
strain	Staphylococcus aureus subsp. aureus LGA251	16423		985006	399751	16423.41	426.04	29903926	188038	2050271	14.5854	Pathogen	0.9781	0.0046	16423	0.7453		1.6820	16597	30350.780773671362	2641.971133756734	430	399321	430.0	15993.410339892165	430	385303	13985	21	5	5	2	0	0	426.04	15313.05	523.39	0.67	0.17	0.17	0.06	0	0	430.00	15463.33	528.99	0.68	0.17	0.17	0.07	0	0	426.04	381907.45	13845.91	20.63	4.92	4.99	1.91	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9780510443680984	
strain	Staphylococcus aureus subsp. aureus M013	16048		1118959	406316	16048.44	7.92	30395289	191284	2071568	14.6726	Pathogen	0.9757	0.0044	16048	0.7429		1.6213	15297	564.6656888124904	49.15295132570668	8	406308	8.0	16040.435456528387	8	387049	19234	10	9	6	0	0	0	7.92	14931.43	957.30	0.32	0.32	0.20	0	0	0	8.00	15072.46	967.11	0.33	0.33	0.21	0	0	0	7.92	383642.28	19045.16	9.79	8.95	5.97	0	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9756577728742365	
strain	Staphylococcus aureus RF122	15842		273036	375213	15842.56	209.71	28067919	178989	1987401	14.1229	Pathogen	0.9761	0.0044	15842	0.7247		1.6274	15749	14963.640753530997	1302.5532101312272	212	375001	212.0	15630.55797244298	212	360173	14801	20	4	1	2	0	0	209.71	14792.39	683.09	0.65	0.15	0.03	0.06	0	0	212.00	14939.02	690.64	0.66	0.15	0.03	0.07	0	0	209.71	356964.67	14651.33	19.81	3.97	1.00	1.91	0	0	NA	NA	Homo sapiens	Mastitis								0.9761440121339742	
strain	Staphylococcus aureus subsp. aureus MRSA252	14964		282458	368643	14964.52	385.49	27575344	172305	1940239	14.2123	Pathogen	0.9754	0.0041	14964	0.6684		1.4524	14148	27386.28590740579	2383.9181392967744	388	368255	388.0	14576.51680566052	388	344897	23329	17	7	5	0	0	0	385.49	13350.11	1088.10	0.55	0.25	0.18	0	0	0	388.00	13475.27	1100.26	0.55	0.26	0.18	0	0	0	385.49	341866.45	23093.17	16.84	6.91	4.99	0	0	0	hospital-acquired	United Kingdom	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9753550936822416	
strain	Staphylococcus aureus subsp. aureus ST398	14182		523796.1	353885	14182.45	1.92	26472523	165055	1892906	13.9851	Pathogen	0.9716	0.0039	14182	0.6590		1.3909	13586	141.1664222031226	12.28823783142667	2	353883	2.0	14180.451645889938	2	336413	17433	24	7	4	2	0	0	1.92	12666.84	1379.28	0.79	0.26	0.13	0.07	0	0	2.00	12785.80	1393.38	0.80	0.26	0.13	0.07	0	0	1.92	333469.95	17257.85	23.67	6.91	4.00	1.95	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9716361371679473	
strain	Staphylococcus aureus subsp. aureus TCH60	13912		548473	357217	13912.99	3.99	26721696	168168	1925592	13.8771	Pathogen	0.9735	0.0039	13912	0.6871		1.3985	13016	282.3328444062452	24.57647566285334	4	357213	4.0	13908.989707329189	4	336710	20472	22	5	3	1	0	0	3.99	12722.71	1053.21	0.70	0.18	0.10	0.03	0	0	4.00	12843.25	1064.71	0.72	0.18	0.10	0.03	0	0	3.99	333744.03	20268.60	21.59	4.92	2.99	0.93	0	0	NA	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9735145744713215	
strain	Staphylococcus aureus 08BA02176	13613		1229492	351498	13613.75	10.79	26293987	163784	1882765	13.9656	Pathogen	0.9763	0.0038	13613	0.6767		1.3784	13190	776.4153221171744	67.58530807284669	11	351487	11.0	13602.750374216452	11	336126	15326	24	1	6	4	0	0	10.79	12653.11	821.73	0.79	0.03	0.20	0.13	0	0	11.00	12772.11	829.48	0.80	0.03	0.20	0.13	0	0	10.79	333179.53	15177.84	23.71	1.00	5.99	3.85	0	0	soft tissue infection of skin	Canada	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9763379296664694	
strain	Escherichia coli ETEC H10407	8811		316401.1	201485	8811.62	1.99	15070881	91665	3761893	4.0062	Pathogen	0.9678	0.0024	8811	0.7300		0.4817	9263	141.1664222031226	12.28823783142667	2	201483	2.0	8809.618763502682	2	58350	1716	141071	60	2	15	0	269	1.99	3501.39	88.51	5129.62	2.15	0.07	0.48	0	10.86	2.00	3531.19	89.46	5175.28	2.16	0.07	0.49	0	10.97	1.99	57857.95	1698.00	139822.07	59.60	2.00	14.85	0	266.43	NA	NA	Homo sapiens	diarrhea								0.967822745226542	
strain	Escherichia coli P12b	8305		910348	192777	8305.66	2.91	14420161	87303	3641992	3.9594	Pathogen	0.9697	0.0023	8305	0.7379		0.4741	8669	211.74963330468393	18.432356747140005	3	192774	3.0	8302.662985152972	3	53543	1628	137246	70	8	14	2	263	2.91	3188.97	77.94	4950.33	2.67	0.33	0.53	0.21	10.53	3.00	3215.21	78.73	4994.31	2.69	0.33	0.53	0.22	10.64	2.91	53103.61	1611.48	136033.01	69.52	7.99	13.92	1.93	260.40	perirectal swab	USA	Homo sapiens	Gastroenteritis								0.9696623568998135	
strain	Deinococcus radiodurans R1	7166		243230	7182	7166.30	7088.50	537211	3963	486177	1.1050		0.9542	0.0020	7166	0.1588		0.6596	7173	505728.7075426868	43991.89143650748	7165	17	7160.0	6.300000000000001	7165	0	15	0	0	0	0	2	0	7088.50	0	6.07	0	0	0	0	0.13	0	7160.00	0	6.15	0	0	0	0	0.15	0	7093.43	0	14.83	0	0	0	0	1.72	0												0.9541545988001946	
strain	Escherichia coli HS	6083		331112	153863	6083.71	2.93	11509428	73334	3184825	3.6138	Pathogen	0.9622	0.0017	6083	0.6859		0.3691	5909	211.74963330468393	18.432356747140005	3	153860	3.0	6080.705294660477	3	34679	1164	117750	59	1	11	0	196	2.93	1863.01	57.82	4095.91	2.00	0.04	0.35	0	7.29	3.00	1879.11	58.50	4133.32	2.02	0.04	0.35	0	7.36	2.93	34380.01	1151.11	116682.37	58.53	1.00	10.99	0	194.31	perirectal swab	USA	Homo sapiens	Gastroenteritis								0.9622022946731396	
strain	Streptococcus agalactiae 2603V/R	5063		208435	22209	5063.98	1377.85	1661190	7619	1149740	1.4448	Pathogen	0.9736	0.0014	5063	0.5322		0.6604	6596	97898.91379786553	8521.892936094397	1387	20822	1387.0	3676.9818357567315	1387	19267	1506	0	1	42	5	1	0	1377.85	3331.10	306.31	0	0.25	12.12	0.46	0.04	0	1387.00	3355.00	309.00	0	0.25	12.23	0.46	0.04	0	1377.85	19129.55	1491.68	0	1.00	41.60	4.96	0.97	0	NA	NA	Homo sapiens	Septicemia; Pneumonia; Meningitis								0.9736371645557661	
strain	Streptococcus agalactiae serogroup V	5063		216466	22209	5063.98	1377.85	1661190	7619	1149740	1.4448	Pathogen	NA	0.0014	5063	0.5322		0.6604	6596	97898.91379786553	8521.892936094397	1387	20822	1387.0	3676.9818357567315	1387	19267	1506	0	1	42	5	1	0	1377.85	3331.10	306.31	0	0.25	12.12	0.46	0.04	0	1387.00	3355.00	309.00	0	0.25	12.23	0.46	0.04	0	1377.85	19129.55	1491.68	0	1.00	41.60	4.96	0.97	0	human clinical samples	USA: Salinas; California; Brazil:Rio de Janeiro; China: Guangxi Province; Canada: Greater Toronto Area; Singapore; USA: Houston; USA: San Antonio	Canis lupus familiaris breed Parson Russell Terrier and Chihuahua mix	Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis								NA	
strain	Bacillus cereus ATCC 10987	4974		222523	12886	4974.96	2349.57	963926	4330	873793	1.1032	Pathogen	0.9753	0.0014	4974	0.1673		0.2683	7119	166929.29425519248	14530.841235662037	2365	10521	2365.0	2609.962460380871	2365	3869	6602	0	11	0	39	0	0	2349.57	1613.53	961.51	0	0.37	0	16.95	0	0	2365.00	1623.84	968.64	0	0.41	0	17.08	0	0	2349.57	3844.21	6552.07	0	10.07	0	38.69	0	0	NA	Canada	Homo sapiens	Food poisoning								0.9753277494618586	
strain	Escherichia coli SE11	4399		409438	124655	4399.83	1.00	9324202	61793	2888901	3.2276	Pathogen	0.9509	0.0012	4399	0.5911		0.2536	4000	70.5832111015613	6.144118915713335	1	124654	1.0	4398.828045136506	1	18832	567	104963	44	3	19	0	226	1.00	835.50	21.49	3490.06	1.44	0.10	0.62	0	8.62	1.00	843.51	21.75	3522.69	1.45	0.10	0.62	0	8.71	1.00	18655.53	560.05	103992.92	43.71	3.00	18.84	0	223.73	perirectal swab	USA	Homo sapiens	Gastroenteritis								0.9508811745290636	
strain	Pseudomonas aeruginosa M18	4173		941193	64627	4173.76	7.88	4833888	47895	3133829	1.5425	Pathogen	0.9735	0.0012	4173	0.4953		0.1858	3890	564.6656888124904	49.15295132570668	8	64619	8.0	4165.759722891875	8	63817	689	42	0	16	55	0	0	7.88	4069.21	37.36	2.17	0	0.80	3.03	0	0	8.00	4121.84	37.86	2.19	0	0.81	3.07	0	0	7.88	63013.80	679.96	41.53	0	15.85	54.21	0	0	human clinical samples	various	Acipenser sturio; aloe vera; arachis hypogaea; bemisia tabaci; Bos taurus; Brassica rapa; Canis lupus familiaris; Capra hircus; capsicum annuum; capsicum frutescens; carica papaya; chamaesyce hirta; chromolaena odorata; cicer arietinum; citrullus lanatus; conus leopardus; conus litteratus; Culex quinquefasciatus; curcuma longa; Cyprinus carpio; diabrotica virgifera; Equus caballus; etroplus maculatus; etroplus suratensis; euonymus japonicus; eutrema wasabi; gallus gallus; glomus mosseae; glycine max; gossypium hirsutum; Helicoverpa armigera; Homo sapiens; hyriopsis cumingii; Labeo rohita; larimichthys crocea; Leptinotarsa decemlineata; ligustrum sinense; luffa aegyptiaca; malus x domestica; Mangifera indica; mimosa pudica; Moschus berezovskii; Musa acuminata; Musca domestica; Nicotiana glauca; Nicotiana tabacum; Onchorhynchus mykiss; oryctes rhinoceros; oryctolagus cuniculus; Oryza sativa; ostrinia nubilalis; Ovis aries; panax ginseng; parthenium hysterophorus; Phaseolus vulgaris; pheretima sieboldi; phlebotomus papatasi; piper nigrum; pisum sativum; poekilocerus pictus; praecitrullus fistulosus; rhynchophorus ferrugineus; sesamum indicum; siganus canaliculatus; Solanum lycopersicum; Solanum melongena; Solanum tuberosum; solenopsis invicta; spodoptera litura; suaeda maritima; Sus scrofa; Sus scrofa domesticus; triticum aestivum; vicia faba; yunnanacris yunnaneus; Zea mays; Zingiber officinale	Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis								0.9735285937201665	
strain	Escherichia coli O111:H- str. 11128	4102		585396	118549	4102.60	1.00	8867077	58994	2785612	3.1832	Pathogen	0.9441	0.0011	4102	0.5186		0.2152	3872	70.5832111015613	6.144118915713335	1	118548	1.0	4101.595935974476	1	14930	532	102855	50	3	14	0	164	1.00	623.78	19.46	3411.73	1.68	0.10	0.45	0	5.96	1.00	629.71	19.69	3443.93	1.69	0.10	0.45	0	6.02	1.00	14789.99	525.88	101895.15	49.72	3.00	13.92	0	162.45	perirectal swab	USA	Homo sapiens	Gastroenteritis								0.9441137932046526	
strain	Pseudomonas aeruginosa B136-33	3641		1280938	57390	3641.14	27.63	4291973	49120	2834085	1.5144	Pathogen	0.9702	0.0010	3641	0.4414		0.1598	2920	1976.3299108437166	172.03532963997338	28	57362	28.0	3613.1408426424023	28	56593	659	40	0	13	57	0	0	27.63	3519.58	35.46	2.03	0	0.68	3.24	0	0	28.00	3571.14	35.96	2.06	0	0.68	3.29	0	0	27.63	55785.44	649.79	39.52	0	12.95	56.05	0	0	human clinical samples	various	Acipenser sturio; aloe vera; arachis hypogaea; bemisia tabaci; Bos taurus; Brassica rapa; Canis lupus familiaris; Capra hircus; capsicum annuum; capsicum frutescens; carica papaya; chamaesyce hirta; chromolaena odorata; cicer arietinum; citrullus lanatus; conus leopardus; conus litteratus; Culex quinquefasciatus; curcuma longa; Cyprinus carpio; diabrotica virgifera; Equus caballus; etroplus maculatus; etroplus suratensis; euonymus japonicus; eutrema wasabi; gallus gallus; glomus mosseae; glycine max; gossypium hirsutum; Helicoverpa armigera; Homo sapiens; hyriopsis cumingii; Labeo rohita; larimichthys crocea; Leptinotarsa decemlineata; ligustrum sinense; luffa aegyptiaca; malus x domestica; Mangifera indica; mimosa pudica; Moschus berezovskii; Musa acuminata; Musca domestica; Nicotiana glauca; Nicotiana tabacum; Onchorhynchus mykiss; oryctes rhinoceros; oryctolagus cuniculus; Oryza sativa; ostrinia nubilalis; Ovis aries; panax ginseng; parthenium hysterophorus; Phaseolus vulgaris; pheretima sieboldi; phlebotomus papatasi; piper nigrum; pisum sativum; poekilocerus pictus; praecitrullus fistulosus; rhynchophorus ferrugineus; sesamum indicum; siganus canaliculatus; Solanum lycopersicum; Solanum melongena; Solanum tuberosum; solenopsis invicta; spodoptera litura; suaeda maritima; Sus scrofa; Sus scrofa domesticus; triticum aestivum; vicia faba; yunnanacris yunnaneus; Zea mays; Zingiber officinale	Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis								0.9701854772694438	
strain	Shigella boydii CDC 3083-94	3323		344609	94123	3323.25	2.99	7040335	47018	2310776	3.0467	Pathogen	0.9559	0.0009	3323	0.5006		0.2028	3204	211.74963330468393	18.432356747140005	3	94120	3.0	3320.250529053771	3	0	1	94038	37	2	5	0	37	2.99	0	0.33	3285.99	1.19	0.06	0.16	0	1.18	3.00	0	0.33	3317.30	1.19	0.06	0.16	0	1.19	2.99	0	0.99	93159.83	36.80	2.00	4.99	0	36.64	12-year-old boy	USA: Arizona	Homo sapiens	Dysentery								0.9559358471455726	
strain	Escherichia coli O157:H7 str. EDL933	3181		155864	89726	3181.33	1.95	6711030	46344	2326864	2.8842	Pathogen	0.9458	0.0009	3181	0.4209		0.1621	2858	141.1664222031226	12.28823783142667	2	89724	2.0	3179.3323320823224	2	13270	407	75950	46	2	7	0	42	1.95	576.65	15.58	2552.87	1.58	0.06	0.22	0	1.36	2.00	582.78	15.77	2577.53	1.60	0.06	0.23	0	1.37	1.95	13133.33	402.35	75228.67	45.64	2.00	6.96	0	41.59	perirectal swab	USA	Homo sapiens	Gastroenteritis								0.9458493760105426	
strain	Shigella flexneri 5 str. 8401	3122		373384	89135	3122.90	3.00	6666901	45263	2263621	2.9452	Pathogen	0.9486	0.0009	3122	0.4949		0.1923	2929	211.74963330468393	18.432356747140005	3	89132	3.0	3119.8966208213596	3	0	0	89033	42	1	6	0	50	3.00	0	0	3086.62	1.38	0.03	0.19	0	1.62	3.00	0	0	3116.64	1.39	0.03	0.19	0	1.64	3.00	0	0	88187.33	41.57	1.00	6.00	0	49.60	NA	NA	Homo sapiens	Dysentery								0.9486082333868826	
strain	Shigella flexneri 2002017	3091		591020	88276	3091.05	1.95	6602635	44776	2245704	2.9401	Pathogen	0.9515	0.0009	3091	0.4829		0.1872	2894	141.1664222031226	12.28823783142667	2	88274	2.0	3089.045835203484	2	1	0	88191	41	1	5	0	35	1.95	0.31	0	3056.33	1.41	0.03	0.16	0	1.12	2.00	0.33	0	3085.97	1.42	0.03	0.16	0	1.14	1.95	0.93	0	87353.89	40.72	1.00	5.00	0	34.63	NA	NA	Homo sapiens	Dysentery								0.9514543023955735	
strain	Rhodobacter sphaeroides ATCC 17025	2929		349102	10963	2929.80	1.91	813088	13702	182898	4.4456		0.8942	0.0008	2929	0.0568		0.2565	923	141.1664222031226	12.28823783142667	2	10961	2.0	2927.801308413809	2	10665	42	144	0	85	20	5	0	1.91	2793.94	8.54	26.35	0	13.44	2.82	0.54	0	2.00	2873.97	8.80	27.51	0	14.00	2.94	0.59	0	1.91	10372.65	40.79	138.01	0	81.39	19.17	4.56	0												0.8942358612016795	
strain	Escherichia coli 042	2523		216592	67917	2523.17	1.00	5079181	35494	1878656	2.7036	Pathogen	0.9542	0.0007	2523	0.3584		0.1356	2353	70.5832111015613	6.144118915713335	1	67916	1.0	2522.1728264957933	1	11677	835	55284	50	6	6	0	58	1.00	582.17	37.45	1872.82	1.64	0.27	0.19	0	1.97	1.00	588.96	37.91	1891.19	1.65	0.27	0.20	0	1.99	1.00	11548.89	825.17	54755.31	49.55	5.99	5.92	0	57.33	NA	NA	Homo sapiens	diarrhea								0.9542175665259673	
strain	Escherichia coli O44:H18	2523		861906	67917	2523.17	1.00	5079181	35494	1878656	2.7036	Pathogen	NA	0.0007	2523	0.3584		0.1356	2353	70.5832111015613	6.144118915713335	1	67916	1.0	2522.1728264957933	1	11677	835	55284	50	6	6	0	58	1.00	582.17	37.45	1872.82	1.64	0.27	0.19	0	1.97	1.00	588.96	37.91	1891.19	1.65	0.27	0.20	0	1.99	1.00	11548.89	825.17	54755.31	49.55	5.99	5.92	0	57.33	perirectal swab	USA	Homo sapiens	Gastroenteritis								NA	
strain	Streptococcus agalactiae ILRI005	2500		1309807	16371	2500.11	15.84	1224130	10676	862594	1.4191	Pathogen	0.9447	0.0007	2500	0.4089		0.3338	1879	1129.3313776249809	98.30590265141336	16	16355	16.0	2484.114311626602	16	15907	448	0	0	0	0	0	0	15.84	2426.44	28.28	0	0	0	0	0	0	16.00	2455.28	28.83	0	0	0	0	0	0	15.84	15722.95	440.60	0	0	0	0	0	0	human clinical samples	USA: Salinas; California; Brazil:Rio de Janeiro; China: Guangxi Province; Canada: Greater Toronto Area; Singapore; USA: Houston; USA: San Antonio	Canis lupus familiaris breed Parson Russell Terrier and Chihuahua mix	Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis								0.9446600878998865	
strain	Shigella dysenteriae Sd197	2486		300267	67737	2486.17	5.89	5065901	35126	1834196	2.7619	Pathogen	0.9598	0.0007	2486	0.4198		0.1603	2365	423.49926660936785	36.86471349428001	6	67731	6.0	2480.1660178068455	6	0	0	67626	33	2	7	0	63	5.89	0	0	2451.76	1.06	0.07	0.23	0	2.21	6.00	0	0	2476.57	1.06	0.07	0.23	0	2.23	5.89	0	0	66967.05	32.73	2.00	6.99	0	62.33	epidemic in China in the 1950s	China	Homo sapiens	Dysentery								0.9598089116884359	
strain	Staphylococcus argenteus sp. aureus	2300		985002.1	41111	2300.41	46.20	3073272	23400	269671	11.3964		0.8487	0.0006	2300	0.0976		0.2346	2321	3317.4109217733812	288.7735890385268	47	41064	47.0	2253.410199407475	47	0	40984	53	16	6	4	1	0	46.20	0	2221.12	2.12	0.66	0.21	0.22	0.11	0	47.00	0	2250.06	2.14	0.67	0.21	0.23	0.11	0	46.20	0	40539.55	52.64	15.75	6.00	3.85	0.97	0												0.8486679702011525	
strain	Bacillus cereus FRI-35	2153		1217984	8866	2153.09	2.97	663004	4681	605282	1.0954	Pathogen	0.9465	0.0006	2153	0.1191		0.1193	2248	211.74963330468393	18.432356747140005	3	8863	3.0	2150.092664923378	3	3378	5475	0	10	0	0	0	0	2.97	1424.93	703.43	0	0.34	0	0	0	0	3.00	1439.12	710.60	0	0.37	0	0	0	0	2.97	3344.55	5420.89	0	9.23	0	0	0	0	NA	NA	Homo sapiens	Anthrax-like illness								0.9464826775297579	
strain	Escherichia coli SMS-3-5	2149		439855	60186	2149.41	1.00	4501200	31872	1751839	2.5694	Pathogen	0.9501	0.0006	2149	0.3456		0.1195	1952	70.5832111015613	6.144118915713335	1	60185	1.0	2148.406802475292	1	9201	609	50274	45	1	4	0	51	1.00	416.04	25.64	1681.21	1.55	0.03	0.13	0	1.87	1.00	421.00	25.98	1697.81	1.56	0.03	0.13	0	1.90	1.00	9099.09	601.39	49789.47	44.72	1.00	4.00	0	50.37	perirectal swab	USA	Homo sapiens	Gastroenteritis								0.9500679272216145	
strain	Escherichia coli APEC O1	1586		405955	46208	1586.09	1.00	3455841	24202	1461234	2.3650	Pathogen	0.9520	0.0004	1586	0.2875		0.0879	1435	70.5832111015613	6.144118915713335	1	46207	1.0	1585.0918061899376	1	8201	738	37192	47	4	2	0	23	1.00	325.71	30.91	1210.06	1.53	0.15	0.06	0	0.74	1.00	329.56	31.34	1221.69	1.55	0.15	0.06	0	0.74	1.00	8110.01	728.43	36840.28	46.65	3.99	1.99	0	22.84	NA	NA	Gallus gallus	Colibacillosis								0.9520318501944248	
strain	Acinetobacter baumannii D1279779	1544		945556	11643	1544.52	282.48	871116	8446	745644	1.1683	Pathogen	0.9704	0.0004	1544	0.2013		0.1175	1936	20116.215163944973	1751.0738909783006	285	11358	285.0	1259.519402716307	285	10227	1123	3	0	4	1	0	0	282.48	1140.98	102.51	0.17	0	0.23	0.05	0	0	285.00	1155.33	103.73	0.17	0	0.23	0.06	0	0	282.48	10101.29	1110.55	2.99	0	3.97	0.99	0	0	Bodily fluid; human clinical samples	Colombia; UK; Canada; US; Malaysia; India; Australia; South Korea; China	Homo sapiens	Nosocomial infections								0.9703808789336213	
strain	Escherichia coli CFT073	1510		199310	45039	1510.77	1.00	3368429	23380	1439013	2.3408	Pathogen	0.9501	0.0004	1510	0.2751		0.0814	1388	70.5832111015613	6.144118915713335	1	45038	1.0	1509.774845757305	1	7418	562	37000	33	1	1	0	23	1.00	275.25	20.49	1197.21	1.10	0.03	0.03	0	0.73	1.00	278.43	20.73	1208.70	1.11	0.03	0.03	0	0.74	1.00	7336.45	555.69	36650.09	32.72	1.00	0.99	0	22.71	NA	USA: Maryland	Homo sapiens	Urinary tract infection								0.9501059101668059	
strain	Acinetobacter baumannii ZW85-1	1483		1400867	11711	1483.89	215.16	876264	8586	748983	1.1699	Pathogen	0.9686	0.0004	1483	0.1990		0.1111	1915	15316.556809038804	1333.273804709794	217	11494	217.0	1266.8852886277816	217	10351	1133	3	0	6	1	0	0	215.16	1145.54	104.79	0.17	0	0.41	0.05	0	0	217.00	1160.08	106.16	0.17	0	0.42	0.06	0	0	215.16	10223.92	1120.01	2.99	0	5.97	0.99	0	0	Bodily fluid; human clinical samples	Colombia; UK; Canada; US; Malaysia; India; Australia; South Korea; China	Homo sapiens	Nosocomial infections								0.9685855775993888	
strain	Staphylococcus haemolyticus JCSC1435	1466		279808	4824	1466.89	303.55	359460	3652	32987	10.8970	Pathogen	0.8315	0.0004	1466	0.0123		0.1539	971	21739.62901928088	1892.3886260397073	308	4516	308.0	1158.8852505257541	308	0	4357	114	38	5	2	0	0	303.55	0	1124.11	10.67	3.12	0.46	0.13	0	0	308.00	0	1144.27	10.79	3.20	0.49	0.13	0	0	303.55	0	4284.15	112.73	37.00	4.76	1.92	0	0	Japanese inpatient at Juntendo Hospital; Tokyo;	Juntendo Hospital Tokyo	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.8314835329102812	
strain	Acinetobacter baumannii BJAB0715	1417		1096996	11471	1417.87	197.52	858246	8348	734351	1.1687	Pathogen	0.9697	0.0004	1417	0.1835		0.0998	1784	14046.0590092107	1222.6796642269537	199	11272	199.0	1218.866726634219	199	10157	1106	3	0	5	1	0	0	197.52	1099.06	103.92	0.17	0	0.29	0.05	0	0	199.00	1113.29	105.05	0.17	0	0.29	0.06	0	0	197.52	10031.24	1094.27	2.99	0	4.97	0.99	0	0	cerebrospinal fluid	China: Beijing	Homo sapiens	Nosocomial infections								0.9697296491693843	
strain	Propionibacterium acnes KPA171202	1197		267747	8050	1197.99	3.96	602202	4050	534059	1.1276	Pathogen	0.9232	0.0003	1197	0.2086		0.1318	1483	282.3328444062452	24.57647566285334	4	8046	4.0	1193.9892968142965	4	7990	0	53	0	3	0	0	0	3.96	1176.72	0	5.49	0	0.46	0	0	0	4.00	1187.97	0	5.56	0	0.46	0	0	0	3.96	7915.99	0	52.45	0	2.96	0	0	0			Bos taurus; Canis lupus familiaris; eisenia fetida; Equus caballus; Homo sapiens; Ovis aries; Sus scrofa; Sus scrofa domesticus	Abscesses; endocarditis; bacteraemia; septic arthritis; endophthalmitis								0.9231576304576308	
strain	Acinetobacter baumannii AB0057	1105		480119	11161	1105.36	2.99	835114	8334	715670	1.1669	Pathogen	0.9658	0.0003	1105	0.1767		0.0769	1052	211.74963330468393	18.432356747140005	3	11158	3.0	1102.355773698267	3	10077	1072	3	0	5	1	0	0	2.99	1002.74	85.33	0.17	0	0.29	0.05	0	0	3.00	1015.39	86.44	0.17	0	0.29	0.06	0	0	2.99	9952.35	1059.45	2.99	0	4.97	0.99	0	0	bloodstream infection of a patient at Walter Reed Army Medical Center	Walter Reed Army Medical Center	Homo sapiens	Nosocomial infections								0.9658277702807768	
strain	Acinetobacter baumannii AB307-0294	1095		557600	11163	1095.42	3.00	835253	8319	715858	1.1668	Pathogen	0.9640	0.0003	1095	0.1903		0.0821	1015	211.74963330468393	18.432356747140005	3	11160	3.0	1092.4237668162593	3	10068	1082	3	0	6	1	0	0	3.00	991.94	86.13	0.17	0	0.41	0.05	0	0	3.00	1004.53	87.25	0.17	0	0.42	0.06	0	0	3.00	9943.36	1069.48	2.99	0	5.97	0.99	0	0	the blood of a hospitalized patient	USA: Buffalo NY	Homo sapiens	Nosocomial infections								0.963994535065598	
strain	Acinetobacter baumannii 1656-2	1049		696749	11622	1049.33	10.85	869482	8450	741554	1.1725	Pathogen	0.9669	0.0003	1049	0.1882		0.0750	929	776.4153221171744	67.58530807284669	11	11611	11.0	1038.3278724328645	11	10497	1106	3	0	5	0	0	0	10.85	942.55	82.43	0.17	0	0.35	0	0	0	11.00	954.41	83.39	0.17	0	0.35	0	0	0	10.85	10367.85	1093.75	2.99	0	4.99	0	0	0	Human clinical samples	NA	Homo sapiens	Nosocomial infections								0.9669237009753389	
strain	Acinetobacter baumannii MDR-TJ	1032		889738	11619	1032.14	16.80	869264	8474	741999	1.1715	Pathogen	0.9674	0.0003	1032	0.1871		0.0733	890	1199.9145887265422	104.4500215671267	17	11602	17.0	1015.1368870293795	17	10484	1109	3	0	5	1	0	0	16.80	919.43	82.58	0.17	0	0.36	0.05	0	0	17.00	931.00	83.54	0.17	0	0.36	0.06	0	0	16.80	10354.84	1096.61	2.99	0	4.97	0.99	0	0	Bodily fluid; human clinical samples	Colombia; UK; Canada; US; Malaysia; India; Australia; South Korea; China	Homo sapiens	Nosocomial infections								0.9673662864974681	
strain	Bacteroides vulgatus ATCC 8482	1028		435590	1039	1028.00	1010.56	77766	407	76754	1.0132	Pathogen	0.9103	0.0003	1028	0.0149		0.0561	1034	71853.70890138941	6254.713056196175	1018	21	1018.0	10.0	1018	0	17	0	4	0	0	0	0	1010.56	0	8.13	0	1.83	0	0	0	0	1018.00	0	8.17	0	1.83	0	0	0	0	1010.56	0	16.91	0	3.99	0	0	0	0	NA	NA	Homo sapiens	commensal; sepsis; abscess or surgical infections								0.9103429989861845	
strain	Acinetobacter baumannii ACICU	1024		405416	11475	1024.14	11.93	858499	8389	733743	1.1700	Pathogen	0.9651	0.0003	1024	0.1879		0.0739	900	846.9985332187357	73.72942698856002	12	11463	12.0	1012.1362941581984	12	10357	1099	2	0	4	1	0	0	11.93	917.44	81.76	0.12	0	0.23	0.05	0	0	12.00	929.03	82.70	0.12	0	0.23	0.06	0	0	11.93	10229.00	1086.92	1.99	0	3.97	0.99	0	0	outbreak	Rome	Homo sapiens	Nosocomial infections								0.9651488459142202	
strain	Acinetobacter baumannii BJAB07104	1022		1096995	11560	1022.48	17.84	864862	8420	738348	1.1713	Pathogen	0.9658	0.0003	1022	0.1868		0.0729	905	1270.4977998281036	110.59414048284003	18	11542	18.0	1004.4839607889535	18	10437	1097	3	0	4	1	0	0	17.84	910.76	80.85	0.17	0	0.23	0.05	0	0	18.00	922.26	81.76	0.17	0	0.23	0.06	0	0	17.84	10308.43	1085.00	2.99	0	3.99	0.99	0	0	Blood	China: Beijing	Homo sapiens	Nosocomial infections								0.9658025618423456	
strain	Acinetobacter baumannii BJAB0868	1007		1096997	11503	1007.22	2.99	860617	8368	734034	1.1724	Pathogen	0.9660	0.0003	1007	0.1879		0.0726	858	211.74963330468393	18.432356747140005	3	11500	3.0	1004.2164843326614	3	10394	1098	2	0	5	1	0	0	2.99	910.46	80.96	0.12	0	0.29	0.05	0	0	3.00	921.87	81.88	0.12	0	0.29	0.06	0	0	2.99	10266.37	1086.01	1.99	0	4.97	0.99	0	0	ascites	China: Beijing	Homo sapiens	Nosocomial infections								0.9660126302597128	
strain	Acinetobacter baumannii TYTH-1	998		1100841	11349	998.63	8.96	849083	8281	725695	1.1700	Pathogen	0.9659	0.0003	998	0.1834		0.0711	855	635.2488999140518	55.297070241420016	9	11340	9.0	989.6256399431325	9	10239	1092	3	0	5	1	0	0	8.96	895.84	81.06	0.17	0	0.29	0.05	0	0	9.00	907.12	81.99	0.17	0	0.29	0.06	0	0	8.96	10112.77	1080.01	2.99	0	4.97	0.99	0	0	Bodily fluid; human clinical samples	Colombia; UK; Canada; US; Malaysia; India; Australia; South Korea; China	Homo sapiens	Nosocomial infections								0.9658636280452468	
strain	Acinetobacter baumannii MDR-ZJ06	991		497978	11417	991.60	2.96	854168	8333	729166	1.1714	Pathogen	0.9650	0.0003	991	0.1827		0.0700	844	211.74963330468393	18.432356747140005	3	11414	3.0	988.6033871958798	3	10307	1100	1	0	6	0	0	0	2.96	894.67	81.30	0.05	0	0.41	0	0	0	3.00	905.91	82.22	0.05	0	0.42	0	0	0	2.96	10179.96	1087.91	1.00	0	5.97	0	0	0	Human clinical samples	NA	Homo sapiens	Nosocomial infections								0.9650199903499234	
strain	Pseudomonas aeruginosa PA7	963		381754	15750	963.07	1.89	1176451	16786	822377	1.4305	Pathogen	0.9627	0.0003	963	0.1248		0.0412	524	141.1664222031226	12.28823783142667	2	15748	2.0	961.0698997636999	2	15230	466	29	0	12	11	0	0	1.89	916.37	24.63	1.41	0	0.60	0.59	0	0	2.00	933.38	25.04	1.44	0	0.61	0.61	0	0	1.89	14950.88	458.25	28.56	0	11.88	10.73	0	0	human clinical samples	various	Acipenser sturio; aloe vera; arachis hypogaea; bemisia tabaci; Bos taurus; Brassica rapa; Canis lupus familiaris; Capra hircus; capsicum annuum; capsicum frutescens; carica papaya; chamaesyce hirta; chromolaena odorata; cicer arietinum; citrullus lanatus; conus leopardus; conus litteratus; Culex quinquefasciatus; curcuma longa; Cyprinus carpio; diabrotica virgifera; Equus caballus; etroplus maculatus; etroplus suratensis; euonymus japonicus; eutrema wasabi; gallus gallus; glomus mosseae; glycine max; gossypium hirsutum; Helicoverpa armigera; Homo sapiens; hyriopsis cumingii; Labeo rohita; larimichthys crocea; Leptinotarsa decemlineata; ligustrum sinense; luffa aegyptiaca; malus x domestica; Mangifera indica; mimosa pudica; Moschus berezovskii; Musa acuminata; Musca domestica; Nicotiana glauca; Nicotiana tabacum; Onchorhynchus mykiss; oryctes rhinoceros; oryctolagus cuniculus; Oryza sativa; ostrinia nubilalis; Ovis aries; panax ginseng; parthenium hysterophorus; Phaseolus vulgaris; pheretima sieboldi; phlebotomus papatasi; piper nigrum; pisum sativum; poekilocerus pictus; praecitrullus fistulosus; rhynchophorus ferrugineus; sesamum indicum; siganus canaliculatus; Solanum lycopersicum; Solanum melongena; Solanum tuberosum; solenopsis invicta; spodoptera litura; suaeda maritima; Sus scrofa; Sus scrofa domesticus; triticum aestivum; vicia faba; yunnanacris yunnaneus; Zea mays; Zingiber officinale	Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis								0.9627180258491749	
strain	Neisseria meningitidis MC58	702		122586	4717	702.02	20.83	352882	2123	324980	1.0859	Pathogen	0.9796	0.0002	702	0.1430		0.0870	1022	1482.2474331327874	129.02649722998007	21	4696	21.0	681.0160543489876	21	3050	1625	0	0	5	16	0	0	20.83	528.42	144.01	0	0	0.30	2.57	0	0	21.00	532.80	145.30	0	0	0.30	2.61	0	0	20.83	3024.51	1610.72	0	0	4.95	15.79	0	0	human clinical samples		Homo sapiens	meningococcal disease								0.979647210798372	
strain	Serratia marcescens WW4	641		435998	674	641.54	623.39	50439	495	49845	1.0119	Pathogen	0.9802	0.0002	641	0.0095		0.0345	656	44538.006205085185	3876.9390358151145	631	43	631.0	10.535343580207755	631	3	17	3	17	3	0	0	0	623.39	1.47	5.19	0.24	2.73	0.77	0	0	0	631.00	1.50	5.25	0.25	2.76	0.78	0	0	0	623.39	2.93	16.83	2.91	16.89	2.97	0	0	0	Respiratory	USA:Virginia; South Korea; Mexico	Homo sapiens	Septicaemia; abscesses; burn infections; osteomyelitis								0.9802485781565422	
strain	Propionibacterium acnes subsp. defendens ATCC 11828	588		1091045	4463	588.17	1.00	333685	3928	299032	1.1159	Pathogen	0.8876	0.0002	588	0.1202		0.0666	498	70.5832111015613	6.144118915713335	1	4462	1.0	587.1742174492177	1	4414	0	46	0	2	0	0	0	1.00	574.53	0	4.26	0	0.13	0	0	0	1.00	582.72	0	4.32	0	0.13	0	0	0	1.00	4348.45	0	45.35	0	1.96	0	0	0			Bos taurus; Canis lupus familiaris; eisenia fetida; Equus caballus; Homo sapiens; Ovis aries; Sus scrofa; Sus scrofa domesticus	Abscesses; endocarditis; bacteraemia; septic arthritis; endophthalmitis								0.8876042972300912	
strain	Staphylococcus warneri SG1	517		1194526	2931	517.13	3.96	217736	2229	29244	7.4455	Pathogen	0.7628	0.0001	517	0.0118		0.0586	262	282.3328444062452	24.57647566285334	4	2927	4.0	513.129336880073	4	0	2840	46	12	25	3	1	0	3.96	0	490.82	4.76	1.07	4.30	0.20	0.11	0	4.00	0	502.55	4.83	1.09	4.34	0.21	0.11	0	3.96	0	2783.73	45.32	11.81	24.75	2.88	0.97	0			Bos taurus; Culex quinquefasciatus; gallus gallus; Homo sapiens; medicago truncatula; Musca domestica; Nicotiana glauca; Phaseolus vulgaris; prunus dulcis; Sus scrofa; Zea mays	infection								0.7628065888686026	
strain	Stenotrophomonas maltophilia group	505		995085	1160	505.03	189.35	86696	1387	84859	1.0216		0.9670	0.0001	505	0.0060		0.0100	521	13551.976531499771	1179.6708318169603	192	968	192.0	313.0281120582203	192	900	0	64	0	4	0	0	0	189.35	296.01	0	10.33	0	0.35	0	0	0	192.00	302.08	0	10.57	0	0.37	0	0	0	189.35	882.00	0	62.47	0	3.64	0	0	0												0.9669802970259384	
strain	Staphylococcus lugdunensis N920143	339		1034809	2181	339.78	9.77	162206	1512	21793	7.4430	Pathogen	0.7617	0.0001	339	0.0084		0.0369	166	705.8321110156131	61.44118915713335	10	2171	10.0	329.7759395943886	10	2	2089	54	19	5	1	1	0	9.77	0.98	314.41	5.23	1.92	0.37	0.07	0.11	0	10.00	1.00	320.89	5.32	1.97	0.41	0.08	0.11	0	9.77	1.96	2052.44	53.17	18.59	4.71	0.97	0.97	0	Abscess	USA:DC	Homo sapiens	infection								0.7616745774739532	
strain	Staphylococcus lugdunensis HKU09-01	336		698737	2278	336.80	1.00	169369	1568	23617	7.1715	Pathogen	0.7586	0.0001	336	0.0089		0.0357	168	70.5832111015613	6.144118915713335	1	2277	1.0	335.8027227648828	1	2	2196	53	20	5	0	1	0	1.00	0.98	320.04	5.20	1.97	0.37	0	0.11	0	1.00	1.00	326.98	5.29	2.01	0.41	0	0.11	0	1.00	1.96	2157.01	52.16	19.53	4.71	0	0.97	0	patient suffering from skin and soft tissue infection		Homo sapiens	infection								0.7586129353766577	
strain	Listeria monocytogenes EGD-e	296		169963	3224	296.42	46.64	241122	1206	230482	1.0462	Pathogen	0.9853	0.0001	296	0.0783		0.0284	381	3317.4109217733812	288.7735890385268	47	3177	47.0	249.41916148638742	47	3013	163	0	1	0	0	0	0	46.64	238.07	9.42	0	0.03	0	0	0	0	47.00	239.87	9.52	0	0.03	0	0	0	0	46.64	2990.15	161.31	0	0.79	0	0	0	0	human clinical samples		apodemus agrarius; apodemus peninsulae; Bos taurus; Capra hircus; cavia porcellus; Cervus elaphus; chinchilla brevicaudata; Homo sapiens; lama pacos; microtus arvalis; myodes glareolus; myodes rufocanus; myodes rutilus; oryctolagus cuniculus; Ovis aries; rattus rattus; Sus scrofa; vulpes lagopus	listerosis								0.9852902526215994	
strain	Lactobacillus gasseri ATCC 33323 = JCM 1131	285		324831	302	285.39	277.89	22592	106	22405	1.0083		0.9754	0.0001	285	0.0118		0.0424	293	19763.299108437164	1720.3532963997338	280	22	280.0	5.391071428571431	280	0	21	0	0	1	0	0	0	277.89	0	5.22	0	0	0.14	0	0	0	280.00	0	5.25	0	0	0.14	0	0	0	277.89	0	20.92	0	0	1.00	0	0	0												0.9754151134588323	
strain	Stenotrophomonas maltophilia K279a	262		522373	490	262.45	148.91	36640	547	36063	1.0160	Pathogen	0.9670	0.0001	262	0.0074		0.0152	289	10658.064876335757	927.7619562727136	151	339	151.0	111.44978421990801	151	312	0	23	0	4	0	0	0	148.91	104.60	0	4.41	0	0.35	0	0	0	151.00	106.58	0	4.49	0	0.37	0	0	0	148.91	306.19	0	22.51	0	3.64	0	0	0	blood infection	NA	Homo sapiens	Bacteraemia; meningitis; wound infection; UTI; pneumonia								0.9669802970259384	
strain	Bacillus cereus biovar anthracis str. CI	199		637380	2694	199.67	2.00	201280	2275	185960	1.0824	Pathogen	0.8065	0.0001	199	0.0358		0.0108	105	141.1664222031226	12.28823783142667	2	2692	2.0	197.66876338306838	2	96	2590	0	6	0	0	0	0	2.00	27.36	166.64	0	0.49	0	0	0	0	2.00	27.94	169.21	0	0.52	0	0	0	0	2.00	94.07	2551.88	0	5.45	0	0	0	0	NA	NA	Homo sapiens	Anthrax								0.8065311208745272	
strain	Bacillus cereus biovar anthracis	199		1179100	2694	199.67	2.00	201280	2275	185960	1.0824	Pathogen	NA	0.0001	199	0.0358		0.0108	105	141.1664222031226	12.28823783142667	2	2692	2.0	197.66876338306838	2	96	2590	0	6	0	0	0	0	2.00	27.36	166.64	0	0.49	0	0	0	0	2.00	27.94	169.21	0	0.52	0	0	0	0	2.00	94.07	2551.88	0	5.45	0	0	0	0	Clinical sample (blood)	USA	Homo sapiens	Anthrax-like illness								NA	
strain	Acinetobacter pittii PHEA-2	153		871585	1127	153.93	28.67	84251	1165	75320	1.1186		0.7466	0.0000	153	0.0195		0.0112	135	2046.913121945278	178.17944855568672	29	1098	29.0	124.93168775668775	29	0	1095	1	0	2	0	0	0	28.67	0	122.52	0.06	0	0.12	0	0	0	29.00	0	124.76	0.06	0	0.12	0	0	0	28.67	0	1076.16	1.00	0	1.99	0	0	0												0.746601552615303	
strain	Stenotrophomonas maltophilia D457	122		1163399	331	122.73	23.64	24723	418	24025	1.0291	Pathogen	0.9488	0.0000	122	0.0050		0.0072	117	1693.9970664374714	147.45885397712004	24	307	24.0	98.72666391915611	24	287	0	20	0	0	0	0	0	23.64	93.72	0	2.90	0	0	0	0	0	24.00	95.75	0	2.98	0	0	0	0	0	23.64	280.95	0	19.48	0	0	0	0	0	blood	USA: New York; NY	Homo sapiens	Bacteraemia; meningitis; wound infection; UTI; pneumonia								0.9487763344117676	
strain	Stenotrophomonas maltophilia JV3	119		868597	339	119.85	16.80	25333	422	24771	1.0227	Pathogen	0.9426	0.0000	119	0.0055		0.0074	115	1199.9145887265422	104.4500215671267	17	322	17.0	102.85166391915614	17	301	0	21	0	0	0	0	0	16.80	97.69	0	3.02	0	0	0	0	0	17.00	99.75	0	3.10	0	0	0	0	0	16.80	294.87	0	20.48	0	0	0	0	0	blood	USA: New York; NY	Homo sapiens	Bacteraemia; meningitis; wound infection; UTI; pneumonia								0.9426197475113631	
strain	Acinetobacter oleivorans DR1	100		436717	792	100.66	22.69	59213	807	53595	1.1048		0.7715	0.0000	100	0.0129		0.0068	82	1623.41385533591	141.31473506140674	23	769	23.0	77.66079645328874	23	0	759	3	0	6	1	0	0	22.69	0	75.65	0.17	0	0.41	0.05	0	0	23.00	0	77.01	0.17	0	0.42	0.06	0	0	22.69	0	746.11	2.99	0	5.97	0.99	0	0												0.7714732254803766	
strain	Enterococcus faecalis OG1RF	73		474186	242	73.32	15.87	18076	98	15970	1.1319		0.9241	0.0000	73	0.0058		0.0075	104	1129.3313776249809	98.30590265141336	16	226	16.0	57.320889815616006	16	186	1	0	33	6	0	0	0	15.87	53.52	0.20	0	2.58	0.55	0	0	0	16.00	53.92	0.20	0	2.63	0.57	0	0	0	15.87	184.64	1.00	0	32.39	5.81	0	0	0												0.9241371304792102	
strain	Bacillus thuringiensis MC28	46		1195464	616	46.99	1.99	45921	535	42402	1.0830	Pathogen	0.7611	0.0000	46	0.0078		0.0024	27	141.1664222031226	12.28823783142667	2	614	2.0	44.9866306991079	2	0	605	0	8	0	1	0	0	1.99	0	43.63	0	0.33	0	0.17	0	0	2.00	0	44.46	0	0.36	0	0.17	0	0	1.99	0	594.87	0	7.29	0	1.00	0	0	soil	China: Wuhan	Invertebrate	None								0.7610970674842641	
strain	Streptococcus pneumoniae TIGR4	37		170187	361	37.04	11.92	26934	145	25420	1.0596	Pathogen	0.9584	0.0000	37	0.0118		0.0048	57	846.9985332187357	73.72942698856002	12	349	12.0	25.038540699355593	12	255	91	2	0	0	0	1	0	11.92	20.34	4.38	0.06	0	0	0	0.04	0	12.00	20.47	4.47	0.06	0	0	0	0.04	0	11.92	253.43	88.89	1.99	0	0	0	0.96	0	the blood of a 30 year old male patient	Kongsvinger; Norway	Homo sapiens	Pneumonia; Meningitis; Bacteremia; Sinusitis; Otitis media; Conjunctivitis								0.9583688366824414	
strain	Streptococcus dysgalactiae subsp. equisimilis RE378	28		617121	275	28.12	1.00	20440	214	14698	1.3907		0.7641	0.0000	28	0.0068		0.0037	23	70.5832111015613	6.144118915713335	1	274	1.0	27.124574592011193	1	0	274	0	0	0	0	0	0	1.00	0	26.65	0	0	0	0	0	0	1.00	0	27.12	0	0	0	0	0	0	1.00	0	268.68	0	0	0	0	0	0												0.7641026291078638	
strain	Streptococcus pneumoniae AP200	13		574093	246	13.40	1.00	18338	140	17123	1.0710	Pathogen	0.9227	0.0000	13	0.0080		0.0018	6	70.5832111015613	6.144118915713335	1	245	1.0	12.396100332505108	1	168	74	2	0	0	0	1	0	1.00	8.82	3.32	0.06	0	0	0	0.04	0	1.00	8.89	3.40	0.07	0	0	0	0.04	0	1.00	166.76	72.03	1.89	0	0	0	0.96	0	the cerebrospinal fluid of a patient with meningitis	Italy	Homo sapiens	Pneumonia								0.922684937536093	
