Aeso                    Congenital oesophageal atresia data
CharSequence2ScoreSequence
                        Convert a character sequence into a score
                        sequence
CharSequences2ScoreSequences
                        Convert several character sequences into score
                        sequences
HydroScore              Dictionnaire
LongSeq                 Deprecated. Use 'Seq1093' instead.
MidSeq                  Deprecated. Use 'Seq219' instead.
MySeqList               Deprecated. Use 'SeqListSCOPe' instead.
RealScores2IntegerScores
                        Convert a real scores vector into an integer
                        scores vector
SJSyndrome.data         Stevens-Johnson syndrome data
Seq1093                 Long protein sequence
Seq219                  Protein sequence
Seq31                   Short protein sequence
SeqListSCOPe            Several sequences
ShortSeq                Deprecated. Use 'Seq31' instead.
aeso.data               Deprecated. Use 'Aeso' instead.
automatic_analysis      Automatic analysis
daudin                  Daudin [p-value] [iid]
dico                    Deprecated. Use 'HydroScore' instead.
exact_mc                Exact method for p-value [Markov chains]
karlin                  Karlin [p-value] [iid]
karlinMonteCarlo        Monte Carlo - Karlin [p-value]
karlinMonteCarlo_double
                        Monte Carlo - Karlin for real scores[p-value]
lindley                 Lindley process
loadMatrixFromFile      Loads matrix from csv-File
loadScoreFromFile       Load score from file
localScore-package      Package for sequence analysis by local score
localScoreC             Local score
localScoreC_double      Local score for sequences of floating values
maxPartialSumd          Maximum of the partial sum [probability] [iid]
mcc                     MCC [p-value] [iid]
monteCarlo              Monte Carlo method [p-value]
monteCarlo_double       Monte Carlo method for real score case
                        [p-value]
scoreDictionnary2probabilityVector
                        Check for missing scores values in the score
                        distribution
scoreSequences2probabilityVector
                        Empirical distribution from sequences
sequences2transmatrix   Transition matrix from sequence(s)
stationary_distribution
                        Stationary distribution [Markov chains]
transmatrix2sequence    Sampling function for Markov chains
