BH_er_lambdacov_global_effectcov_global_responsecov_global
                        Effect response Beverton-Holt model with
                        covariate effects on lambda, effect, and
                        response
BH_er_lambdacov_none_effectcov_none_responsecov_none
                        Effect response model without covariate effects
BH_pm_alpha_global_lambdacov_none_alphacov_none
                        Beverton-Holt model with a global alpha and no
                        covariate effects
BH_pm_alpha_none_lambdacov_none_alphacov_none
                        Beverton-Holt model with no alphas and no
                        covariate effects
BH_pm_alpha_pairwise_lambdacov_global_alphacov_global
                        Beverton-Holt model with pairwise alphas and
                        global covariate effects on lambda and alpha
BH_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise
                        Beverton-Holt model with pairwise alphas,
                        covariate effects on lambda, and pairwise
                        covariate effects on alpha
BH_pm_alpha_pairwise_lambdacov_none_alphacov_none
                        Beverton-Holt model with pairwise alphas and no
                        covariate effects
BH_project_alpha_global_lambdacov_none_alphacov_none
                        Beverton-Holt model for projecting abundances,
                        with a global alpha and no covariate effects
BH_project_alpha_none_lambdacov_none_alphacov_none
                        Beverton-Holt model for projecting abundances,
                        with no alpha and no covariate effects
BH_project_alpha_pairwise_lambdacov_global_alphacov_global
                        Beverton-Holt model for projecting abundances,
                        with specific alpha values and global covariate
                        effects on alpha and lambda
BH_project_alpha_pairwise_lambdacov_global_alphacov_pairwise
                        Beverton-Holt model for projecting abundances,
                        with specific alpha values and global covariate
                        effects on alpha and lambda
BH_project_alpha_pairwise_lambdacov_none_alphacov_none
                        Beverton-Holt model for projecting abundances,
                        with specific alpha values and no covariate
                        effects
LV_er_lambdacov_global_effectcov_global_responsecov_global
                        Effect response Lotka-Volterra model with
                        covariate effects on lambda, effect, and
                        response
LV_er_lambdacov_none_effectcov_none_responsecov_none
                        Effect response Lotka-Volterra model without
                        covariate effects
LV_pm_alpha_global_lambdacov_none_alphacov_none
                        Lotka-Volterra model with a global alpha and no
                        covariate effects
LV_pm_alpha_none_lambdacov_none_alphacov_none
                        Lotka-Volterra model with no alphas and no
                        covariate effects
LV_pm_alpha_pairwise_lambdacov_global_alphacov_global
                        Lotka-Volterra model with pairwise alphas and
                        global covariate effects on lambda and alpha
LV_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise
                        Lotka-Volterra model with pairwise alphas,
                        covariate effects on lambda, and pairwise
                        covariate effects on alpha
LV_pm_alpha_pairwise_lambdacov_none_alphacov_none
                        Lotka-Volterra model with pairwise alphas and
                        no covariate effects
LV_project_alpha_global_lambdacov_none_alphacov_none
                        Lotka-Volterra model for projecting abundances,
                        with a global alpha and no covariate effects
LV_project_alpha_none_lambdacov_none_alphacov_none
                        Model for projecting abundances, with no alpha
                        and no covariate effects
LV_project_alpha_pairwise_lambdacov_global_alphacov_global
                        Lotka-Volterra model for projecting abundances,
                        with specific alpha values and global covariate
                        effects on alpha and lambda
LV_project_alpha_pairwise_lambdacov_global_alphacov_pairwise
                        Lotka-Volterra model for projecting abundances,
                        with specific alpha values and global covariate
                        effects on alpha and lambda
LV_project_alpha_pairwise_lambdacov_none_alphacov_none
                        Lotka-Volterra model for projecting abundances,
                        with specific alpha values and no covariate
                        effects
LW_er_lambdacov_global_effectcov_global_responsecov_global
                        Effect response Law-Watkinson model with
                        covariate effects on lambda, effect, and
                        response
LW_er_lambdacov_none_effectcov_none_responsecov_none
                        Effect response Law-Watkinson model without
                        covariate effects
LW_pm_alpha_global_lambdacov_none_alphacov_none
                        Law-Watkinson model with a global alpha and no
                        covariate effects
LW_pm_alpha_none_lambdacov_none_alphacov_none
                        Law-Watkinson model with no alphas and no
                        covariate effects
LW_pm_alpha_pairwise_lambdacov_global_alphacov_global
                        Law-Watkinson model with pairwise alphas and
                        global covariate effects on lambda and alpha
LW_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise
                        Law-Watkinson model with pairwise alphas,
                        covariate effects on lambda, and pairwise
                        covariate effects on alpha
LW_pm_alpha_pairwise_lambdacov_none_alphacov_none
                        Law-Watkinson model with pairwise alphas and no
                        covariate effects
LW_project_alpha_global_lambdacov_none_alphacov_none
                        Law-Watkinson model for projecting abundances,
                        with a global alpha and no covariate effects
LW_project_alpha_none_lambdacov_none_alphacov_none
                        Model for projecting abundances, with no alpha
                        and no covariate effects
LW_project_alpha_pairwise_lambdacov_global_alphacov_global
                        Law-Watkinson model for projecting abundances,
                        with specific alpha values and global covariate
                        effects on alpha and lambda
LW_project_alpha_pairwise_lambdacov_global_alphacov_pairwise
                        Law-Watkinson model for projecting abundances,
                        with specific alpha values and global covariate
                        effects on alpha and lambda
LW_project_alpha_pairwise_lambdacov_none_alphacov_none
                        Law-Watkinson model for projecting abundances,
                        with specific alpha values and no covariate
                        effects
RK_er_lambdacov_global_effectcov_global_responsecov_global
                        Effect response Beverton-Holt model with
                        covariate effects on lambda, effect, and
                        response
RK_er_lambdacov_none_effectcov_none_responsecov_none
                        Effect response Ricker model without covariate
                        effects
RK_pm_alpha_global_lambdacov_none_alphacov_none
                        Ricker model with a global alpha and no
                        covariate effects
RK_pm_alpha_none_lambdacov_none_alphacov_none
                        Ricker model with no alphas and no covariate
                        effects
RK_pm_alpha_pairwise_lambdacov_global_alphacov_global
                        Ricker model with pairwise alphas and global
                        covariate effects on lambda and alpha
RK_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise
                        Ricker model with pairwise alphas, covariate
                        effects on lambda, and pairwise covariate
                        effects on alpha
RK_pm_alpha_pairwise_lambdacov_none_alphacov_none
                        Ricker model with pairwise alphas and no
                        covariate effects
RK_project_alpha_global_lambdacov_none_alphacov_none
                        Ricker model for projecting abundances, with a
                        global alpha and no covariate effects
RK_project_alpha_none_lambdacov_none_alphacov_none
                        Model for projecting abundances, with no alpha
                        and no covariate effects
RK_project_alpha_pairwise_lambdacov_global_alphacov_global
                        Ricker model for projecting abundances, with
                        specific alpha values and global covariate
                        effects on alpha and lambda
RK_project_alpha_pairwise_lambdacov_global_alphacov_pairwise
                        Ricker model for projecting abundances, with
                        specific alpha values and global covariate
                        effects on alpha and lambda
RK_project_alpha_pairwise_lambdacov_none_alphacov_none
                        Ricker model for projecting abundances, with
                        specific alpha values and no covariate effects
abundance               Abundance measurements
abundance_projection    Project abundances from population dynamics
                        models
avg_fitness_diff        Average fitness differences
build_param             Build param structure
calculate_densities     Obtain species densities from transition
                        matrices
competitive_ability     Competitive ability among pairs of species
cxr_er_bootstrap        standard error estimates for effect and
                        response parameters
cxr_er_fit              General optimization for effect-response models
cxr_generate_test_data
                        Generate simulated interaction data
cxr_pm_bootstrap        Standard error estimates for model parameters
cxr_pm_fit              General optimization for population models
cxr_pm_multifit         Multi-species parameter optimization
densities_to_df         Converts a densities list to a tidy dataframe
fill_demography_matrix
                        Fill the vec-permutation demography matrix
fill_dispersal_matrix   Fill the vec-permutation dispersal matrix
fill_transition_matrix
                        Fill a transition matrix
fitness_ratio           Fitness ratio among two or more species
generate_vital_rate_coefs
                        Generate coefficients for obtaining vital rates
glm_example_coefs       Generalized linear model coefficients
metapopulation_example_param
                        Metapopulation dynamics coefficients
neigh_list              neighbours and fitness observations
niche_overlap           Niche overlap between two species
salinity_list           Salinity measurements
spatial_sampling        spatial arrangement of the observations
species_fitness         Fitness of a species
species_rates           Species germination and survival rates
summary.cxr_er_fit      CXR summary method for effect response model
                        fits
summary.cxr_pm_fit      CXR summary method for population model fits
summary.cxr_pm_multifit
                        CXR summary method for multispecies fits
vec_permutation_matrices
                        Generate templates for dispersal, demography,
                        and permutation matrices
vital_rate              Vital rate calculation
